BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 474 papers shown

Title
Evaluating multiple large language models in pediatric ophthalmology J. Holmes Rui Peng Yiwei Li Jinyu Hu Zheng Liu ... Wei Liu Hong Wei Jie Zou Tianming Liu Yi Shao AI4Ed ELM LM&MA 21 0 0 07 Nov 2023
Better with Less: A Data-Active Perspective on Pre-Training Graph Neural Networks Jiarong Xu Renhong Huang Xin Jiang Yuxuan Cao Carl Yang Chunping Wang Yang Yang AI4CE 31 14 0 02 Nov 2023
AdaSent: Efficient Domain-Adapted Sentence Embeddings for Few-Shot Classification Yongxin Huang Kexin Wang Sourav Dutta Raj Nath Patel Goran Glavas Iryna Gurevych VLM 18 4 0 01 Nov 2023
Sentence Bag Graph Formulation for Biomedical Distant Supervision Relation Extraction Hao Zhang Yang Liu Xiaoyan Liu Tianming Liang Gaurav Sharma Liang Xue Maozu Guo 27 1 0 29 Oct 2023
CLIFT: Analysing Natural Distribution Shift on Question Answering Models in Clinical Domain Ankit Pal 19 2 0 19 Oct 2023
Data Augmentations for Improved (Large) Language Model Generalization Amir Feder Yoav Wald Claudia Shi S. Saria David M. Blei OOD CML 32 7 0 19 Oct 2023
Large Models for Time Series and Spatio-Temporal Data: A Survey and Outlook Ming Jin Qingsong Wen Yuxuan Liang Chaoli Zhang Siqiao Xue ... Shirui Pan Vincent S. Tseng Yu Zheng Lei Chen Hui Xiong AI4TS SyDa 35 117 0 16 Oct 2023
Surveying the Landscape of Text Summarization with Deep Learning: A Comprehensive Review Guanghua Wang Weili Wu AI4TS AILaw 33 3 0 13 Oct 2023
A Recent Survey of Heterogeneous Transfer Learning Runxue Bao Yiming Sun Yuhe Gao Jindong Wang Qiang Yang Zhi-Hong Mao Ye Ye 22 4 0 12 Oct 2023
Multi-domain improves out-of-distribution and data-limited scenarios for medical image analysis Ece Ozkan Xavier Boix OOD 28 0 0 10 Oct 2023
Using Weak Supervision and Data Augmentation in Question Answering Chumki Basu Binyuan Hui Allen McIntosh Wei Wang J. Wullert OOD 44 0 0 28 Sep 2023
Foundation Metrics for Evaluating Effectiveness of Healthcare Conversations Powered by Generative AI Mahyar Abbasian Elahe Khatibi Iman Azimi David Oniani Zahra Shakeri Hossein Abad ... Bryant Lin Olivier Gevaert Li-Jia Li Ramesh C. Jain Amir M. Rahmani LM&MA ELM AI4MH 37 66 0 21 Sep 2023
Information Flow in Graph Neural Networks: A Clinical Triage Use Case Víctor Valls Mykhaylo Zayats Alessandra Pascale 19 1 0 12 Sep 2023
Knowledge-tuning Large Language Models with Structured Medical Knowledge Bases for Reliable Response Generation in Chinese Hao Wang Sendong Zhao Zewen Qiang Zijian Li Nuwa Xi ... Haoqiang Guo Yuhan Chen Haoming Xu Bing Qin Ting Liu LM&MA AI4MH 24 17 0 08 Sep 2023
Aligning Large Language Models for Clinical Tasks Supun Manathunga Isuru Hettigoda LM&MA ELM AI4MH 23 10 0 06 Sep 2023
Improving Image Classification of Knee Radiographs: An Automated Image Labeling Approach Jikai Zhang Carlos Santos Christine Park Maciej Mazurowski R. Colglazier 19 2 0 06 Sep 2023
Multimodal Foundation Models For Echocardiogram Interpretation M. Christensen Milos Vukadinovic N. Yuan David Ouyang MedIm 21 7 0 29 Aug 2023
Unlocking Hardware Security Assurance: The Potential of LLMs Xingyu Meng Amisha Srivastava Ayush Arunachalam Avik Ray Pedro Henrique Silva Rafail Psiakis Yiorgos Makris K. Basu 19 29 0 21 Aug 2023
Learning Representations on Logs for AIOps Pranjal Gupta Harshit Kumar Debanjana Kar Karan Bhukar Pooja Aggarwal P. Mohapatra 30 11 0 18 Aug 2023
Finding Stakeholder-Material Information from 10-K Reports using Fine-Tuned BERT and LSTM Models V. Z. Chen 24 0 0 15 Aug 2023
MC-DRE: Multi-Aspect Cross Integration for Drug Event/Entity Extraction Jie Yang S. Han Siqu Long Josiah Poon Goran Nenadic 37 0 0 12 Aug 2023
Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension Leilei Su Jian Chen Yifan Peng Cong Sun 23 2 0 12 Aug 2023
Local Large Language Models for Complex Structured Medical Tasks V. Bumgardner Aaron D. Mullen Samuel E. Armstrong Caylin D. Hickey Jeffrey A. Talbert 26 5 0 03 Aug 2023
BioBERT Based SNP-traits Associations Extraction from Biomedical Literature Mohammad Dehghani Behrouz Bokharaeian Zahra Yazdanparast 16 1 0 03 Aug 2023
Med-Flamingo: a Multimodal Medical Few-shot Learner Michael Moor Qian Huang Shirley Wu Michihiro Yasunaga C. Zakka Yashodhara Dalmia E. Reis Pranav Rajpurkar J. Leskovec LM&MA MedIm 27 231 0 27 Jul 2023
Prot2Text: Multimodal Protein's Function Generation with GNNs and Transformers Hadi Abdine Michail Chatzianastasis Costas Bouyioukos Michalis Vazirgiannis 28 40 0 25 Jul 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition Aidan Mannion Thierry Chevalier D. Schwab Lorraine Goeuriot MedIm 51 3 0 20 Jul 2023
Do not Mask Randomly: Effective Domain-adaptive Pre-training by Masking In-domain Keywords Shahriar Golchin Mihai Surdeanu N. Tavabi A. Kiapour 13 4 0 14 Jul 2023
DeepOnto: A Python Package for Ontology Engineering with Deep Learning Yuan He Jiaoyan Chen Hang Dong Ian Horrocks Carlo Allocca Taehun Kim B. Sapkota 16 23 0 06 Jul 2023
Parameter-Efficient Fine-Tuning of LLaMA for the Clinical Domain Aryo Pradipta Gema Pasquale Minervini Luke Daines Tom Hope Beatrice Alex LM&MA ALM 32 40 0 06 Jul 2023
Exploring New Frontiers in Agricultural NLP: Investigating the Potential of Large Language Models for Food Applications Saed Rezayi Zheng Liu Zihao Wu Chandra Dhakal Bao Ge ... Gengchen Mai Ninghao Liu Chen Zhen Tianming Liu Sheng R. Li 26 32 0 20 Jun 2023
Building a Corpus for Biomedical Relation Extraction of Species Mentions Oumaima El Khettari Solen Quiniou Samuel Chaffron 16 2 0 14 Jun 2023
QUERT: Continual Pre-training of Language Model for Query Understanding in Travel Domain Search Jian Xie Yidan Liang Jingping Liu Yanghua Xiao Baohua Wu Shenghua Ni VLM LRM 30 8 0 11 Jun 2023
CUED at ProbSum 2023: Hierarchical Ensemble of Summarization Models Potsawee Manakul Yassir Fathullah Adian Liusie Vyas Raina Vatsal Raina Mark J. F. Gales 27 12 0 08 Jun 2023
Extensive Evaluation of Transformer-based Architectures for Adverse Drug Events Extraction Simone Scaboro Beatrice Portelli Emmanuele Chersoni Enrico Santus Giuseppe Serra 16 8 0 08 Jun 2023
Leveraging Knowledge Graph Embeddings to Enhance Contextual Representations for Relation Extraction F. Laleye Loïc Rakotoson S. Massip 16 1 0 07 Jun 2023
CoSiNES: Contrastive Siamese Network for Entity Standardization Jiaqing Yuan Michele Merler M. Choudhury Raju Pavuluri Munindar P. Singh M. Vukovic 18 0 0 05 Jun 2023
shs-nlp at RadSum23: Domain-Adaptive Pre-training of Instruction-tuned LLMs for Radiology Report Impression Generation Sanjeev Kumar Karn Rikhiya Ghosh P. Kusuma Oladimeji Farri LM&MA MedIm AI4CE 31 12 0 05 Jun 2023
RadLing: Towards Efficient Radiology Report Understanding Rikhiya Ghosh Sanjeev Kumar Karn Manuela Danu Larisa Micu Ramya Vunikili Oladimeji Farri MedIm 16 6 0 04 Jun 2023
Understanding Breast Cancer Survival: Using Causality and Language Models on Multi-omics Data Mugariya Farooq Shahad Hardan Aigerim Zhumbhayeva Yu Zheng Preslav Nakov Kun Zhang CML 19 1 0 28 May 2023
Difference-Masking: Choosing What to Mask in Continued Pretraining Alex Wilf Syeda Nahida Akter Leena Mathur Paul Pu Liang Sheryl Mathew Mengrou Shou Eric Nyberg Louis-Philippe Morency CLL SSL 24 4 0 23 May 2023
Pre-training Multi-task Contrastive Learning Models for Scientific Literature Understanding Yu Zhang Hao Cheng Zhihong Shen Xiaodong Liu Yejiang Wang Jianfeng Gao 26 13 0 23 May 2023
Evaluating Prompt-based Question Answering for Object Prediction in the Open Research Knowledge Graph Jennifer D'Souza Moussab Hrou Sören Auer 19 2 0 22 May 2023
Farewell to Aimless Large-scale Pretraining: Influential Subset Selection for Language Model Xiao Wang Wei Zhou Qi Zhang Jie Zhou Songyang Gao Junzhe Wang Menghan Zhang Xiang Gao Yunwen Chen Tao Gui 40 7 0 22 May 2023
Enhancing Small Medical Learners with Privacy-preserving Contextual Prompting Xinlu Zhang Shiyang Li Xianjun Yang Chenxin Tian Yao Qin Linda R. Petzold 19 9 0 22 May 2023
TADA: Efficient Task-Agnostic Domain Adaptation for Transformers Chia-Chien Hung Lukas Lange Jannik Strötgen 30 9 0 22 May 2023
ESCOXLM-R: Multilingual Taxonomy-driven Pre-training for the Job Market Domain Mike Zhang Rob van der Goot Barbara Plank 16 14 0 20 May 2023
MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement Zifeng Wang Chufan Gao Cao Xiao Jimeng Sun LMTD 22 12 0 20 May 2023
Appraising the Potential Uses and Harms of LLMs for Medical Systematic Reviews Hye Sun Yun Iain J. Marshall T. Trikalinos Byron C. Wallace 19 16 0 19 May 2023
MatSci-NLP: Evaluating Scientific Language Models on Materials Science Language Tasks Using Text-to-Schema Modeling Yurun Song Santiago Miret Bang Liu 25 29 0 14 May 2023