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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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Query Expansion in the Age of Pre-trained and Large Language Models: A Comprehensive Survey Minghan Li Xinxuan Lv Junjie Zou Tongna Chen Chao Zhang Suchao An Ercong Nie Guodong Zhou 88 4 0 09 Sep 2025
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A Study of Large Language Models for Patient Information Extraction: Model Architecture, Fine-Tuning Strategy, and Multi-task Instruction Tuning Cheng Peng Xinyu Dong Mengxian Lyu Daniel Paredes Y. Zhang Yonghui Wu LM&MA 68 0 0 05 Sep 2025
RTGMFF: Enhanced fMRI-based Brain Disorder Diagnosis via ROI-driven Text Generation and Multimodal Feature Fusion Junhao Jia Yifei Sun Yunyou Liu Cheng Yang Changmiao Wang Feiwei Qin Yong Peng Wenwen Min 84 2 0 03 Sep 2025
Hierarchical Section Matching Prediction (HSMP) BERT for Fine-Grained Extraction of Structured Data from Hebrew Free-Text Radiology Reports in Crohn's Disease Zvi Badash Hadas Ben-Atya N. Gavrielov L. Hazan G. Focht R. Cytter-Kuint Talar Hagopian Dan Turner Moti Freiman 56 0 0 03 Sep 2025
Semantic Analysis of SNOMED CT Concept Co-occurrences in Clinical Documentation using MIMIC-IV Ali Noori Somya Mohanty Prashanti Manda 24 0 0 03 Sep 2025
Weakly Supervised Medical Entity Extraction and Linking for Chief Complaints Zhimeng Luo Zhendong Wang Rui Meng Diyang Xue Adam Frisch Daqing He 88 0 0 02 Sep 2025
An Epidemiological Knowledge Graph extracted from the World Health Organization's Disease Outbreak NewsScientific Data (Sci Data), 2025 Sergio Consoli Pietro Coletti Peter Markov Lia Orfei Indaco Biazzo Lea Schuh Nicolas Stefanovitch Lorenzo Bertolini Mario Ceresa N. Stilianakis 89 2 0 02 Sep 2025
Scaling behavior of large language models in emotional safety classification across sizes and tasks Edoardo Pinzuti Oliver Tüscher André Ferreira Castro AI4MH 84 0 0 02 Sep 2025
A Multi-target Bayesian Transformer Framework for Predicting Cardiovascular Disease Biomarkers during Pandemics Trusting Inekwe Emmanuel Agu Winnie Mkandawire Andres Colubri 120 0 0 01 Sep 2025
Benchmarking GPT-5 in Radiation Oncology: Measurable Gains, but Persistent Need for Expert Oversight Ugur Dinc Jibak Sarkar P. Schubert S. Semrau T. Weissmann ... Benjamin Frey Christoph Bert Stefanie Corradini R. Fietkau F. Putz LM&MA ELM 135 1 0 29 Aug 2025
Benchmarking GPT-5 for biomedical natural language processing Yu Hou Zaifu Zhan Min Zeng Yifan Wu Shuang Zhou Rui Zhang LM&MA AI4MH ELM 232 3 0 28 Aug 2025
Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question AnsweringConference and Labs of the Evaluation Forum (CLEF), 2025 A. Nentidis Georgios Katsimpras Anastasia Krithara Martin Krallinger Miguel Rodríguez-Ortega ... Nicola Ferro S. Marchesin Marco Martinelli Gianmaria Silvello Georgios Paliouras 72 36 0 28 Aug 2025
AI-Powered Detection of Inappropriate Language in Medical School Curricula Chiman Salavati Shannon Song Scott A. Hale Roberto E. Montenegro Shiri Dori-Hacohen Fabricio Murai ELM 52 0 0 27 Aug 2025
Reasoning LLMs in the Medical Domain: A Literature Survey Armin Berger Sarthak Khanna David Berghaus R. Sifa LM&MA LRM 144 1 0 26 Aug 2025
Inference Gap in Domain Expertise and Machine Intelligence in Named Entity Recognition: Creation of and Insights from a Substance Use-related Dataset Sumon Kanti Dey Jeanne M. Powell Azra Ismail Jeanmarie Perrone Abeed Sarker 54 0 0 26 Aug 2025
Demystifying Scientific Problem-Solving in LLMs by Probing Knowledge and Reasoning Alan Li Yixin Liu Arpan Sarkar Doug Downey Arman Cohan LRM 77 1 0 26 Aug 2025
Generative Foundation Model for Structured and Unstructured Electronic Health Records Sonish Sivarajkumar Hang Zhang Yuelyu Ji Maneesh Bilalpur Xizhi Wu Chenyu Li Min Gu Kwak Shyam Visweswaran YanShan Wang AI4TS LM&MA MedIm 112 0 0 22 Aug 2025
ReProCon: Scalable and Resource-Efficient Few-Shot Biomedical Named Entity Recognition Jeongkyun Yoo Nela Riddle Andrew Hoblitzell 60 0 0 22 Aug 2025
Subjective Behaviors and Preferences in LLM: Language of Browsing Sai Sundaresan Harshita Chopra Atanu R. Sinha Koustava Goswami Nagasai Saketh Naidu Raghav Karan N Anushka 156 0 0 21 Aug 2025
A Robust BERT-Based Deep Learning Model for Automated Cancer Type Extraction from Unstructured Pathology Reports Minh Tran Jeffery C. Chan Min Li Huang Maya Kansara John P. Grady Christine E. Napier Subotheni Thavaneswaran Mandy L. Ballinger David M. Thomas Frank P. Lin 48 0 0 21 Aug 2025
The Promise of Large Language Models in Digital Health: Evidence from Sentiment Analysis in Online Health Communities Xiancheng Li Georgios D. Karampatakis Helen E. Wood Chris J. Griffiths Borislava Mihaylova Neil S. Coulson Alessio Pasinato P. Panzarasa Marco Viviani Anna De Simoni AI4MH LM&MA 103 0 0 19 Aug 2025
Scalable Scientific Interest Profiling Using Large Language Models Yilun Liang Gongbo Zhang Edward Sun B. Idnay Yilu Fang Fangyi Chen Casey Ta Yifan Peng Chunhua Weng 96 0 0 19 Aug 2025
Coarse-to-Fine Personalized LLM Impressions for Streamlined Radiology Reports Chengbo Sun Hui Yi Leong Lei Li LM&MA 180 3 0 19 Aug 2025
Extracting Post-Acute Sequelae of SARS-CoV-2 Infection Symptoms from Clinical Notes via Hybrid Natural Language Processing Zilong Bai Zihan Xu Cong Sun Chengxi Zang H. Timothy Bunnell ... Thomas Carton Christopher B. Forrest Rainu Kaushal Fei Wang Yifan Peng 76 0 0 17 Aug 2025
MedKGent: A Large Language Model Agent Framework for Constructing Temporally Evolving Medical Knowledge Graph Duzhen Zhang Zixiao Wang Zhong-Zhi Li Yahan Yu Shuncheng Jia ... Yingying Zhang Tielin Zhang Jie Yang Xiuying Chen Le Song MedIm AI4MH 256 0 0 17 Aug 2025
QuarkMed Medical Foundation Model Technical Report A. Li Bin Yan Bingfeng Cai Chenxi Li Cunzhong Zhao ... Xin Shang Yao Wu Yu Cao Zhenxin Ma Zhuang Jia MedIm LM&MA 167 0 0 16 Aug 2025
AI in Mental Health: Emotional and Sentiment Analysis of Large Language Models' Responses to Depression, Anxiety, and Stress Queries Arya VarastehNezhad Reza Tavasoli Soroush Elyasi MohammadHossein LotfiNia Hamed Farbeh AI4MH 66 1 0 15 Aug 2025
Learning Facts at Scale with Active Reading Jessy Lin Vincent-Pierre Berges Xilun Chen Anuj Kumar Gargi Ghosh Barlas Oğuz RALM KELM 140 2 0 13 Aug 2025
Memory Decoder: A Pretrained, Plug-and-Play Memory for Large Language Models Jiaqi Cao Jiarui Wang Rubin Wei Qipeng Guo Kai Chen Bowen Zhou Zhouhan Lin RALM CLL 158 2 0 13 Aug 2025
Benchmarking the Medical Understanding and Reasoning of Large Language Models in Arabic Healthcare Tasks Nouar Aldahoul Yasir Zaki LM&MA AI4MH ELM 134 0 0 13 Aug 2025
Improving ARDS Diagnosis Through Context-Aware Concept Bottleneck Models Anish Narain Ritam Majumdar Nikita Narayanan Dominic Marshall Sonali Parbhoo 84 0 0 13 Aug 2025
MedAtlas: Evaluating LLMs for Multi-Round, Multi-Task Medical Reasoning Across Diverse Imaging Modalities and Clinical Text Ronghao Xu Zhen Huang Y. X. Wei Xiaoqian Zhou Zikang Xu Ting Liu Zihang Jiang S.Kevin Zhou LM&MA ELM 112 1 0 13 Aug 2025
Leveraging Large Language Models for Rare Disease Named Entity Recognition Nan Miles Xi Yu Deng Lin Wang 88 0 0 12 Aug 2025
Weakly Supervised Fine-grained Span-Level Framework for Chinese Radiology Report Quality Assurance Kaiyu Wang Lin Mu Zhiyao Yang Ximing Li Xiaotang Zhou Wanfu Gao Huimao Zhang LM&MA 132 0 0 12 Aug 2025
Data-Efficient Biomedical In-Context Learning: A Diversity-Enhanced Submodular Perspective Jun Wang Zaifu Zhan Qixin Zhang Mingquan Lin Meijia Song Rui Zhang 102 1 0 11 Aug 2025
GLiClass: Generalist Lightweight Model for Sequence Classification Tasks Ihor Stepanov Mykhailo Shtopko Dmytro Vodianytskyi Oleksandr Lukashov Alexander Yavorskyi Mykyta Yaroshenko VLM 78 0 0 11 Aug 2025
Enhancing Rumor Detection Methods with Propagation Structure Infused Language ModelInternational Conference on Computational Linguistics (COLING), 2025 Chaoqun Cui Siyuan Li Kunkun Ma Caiyan Jia 104 4 0 10 Aug 2025
LLMCARE: early detection of cognitive impairment via transformer models enhanced by LLM-generated synthetic dataFrontiers in Artificial Intelligence (Front. Artif. Intell.), 2025 Ali Zolnour Hossein Azadmaleki Yasaman Haghbin Fatemeh Taherinezhad Mohamad Javad Momeni Nezhad ... Suzanne Bakken Yadollah Yaghoobzadeh Abdol-Hossein Vahabie Masoud Rouhizadeh Maryam Zolnoori LM&MA 108 1 0 08 Aug 2025
RegionMed-CLIP: A Region-Aware Multimodal Contrastive Learning Pre-trained Model for Medical Image Understanding Tianchen Fang Guiru Liu MedIm VLM 73 2 0 07 Aug 2025
MedPatch: Confidence-Guided Multi-Stage Fusion for Multimodal Clinical Data Baraa Al Jorf Farah Shamout MedIm 60 0 0 07 Aug 2025
A Multi-Stage Large Language Model Framework for Extracting Suicide-Related Social Determinants of HealthCommunications Medicine (Commun. Med.), 2025 Song Wang Yishu Wei Haotian Ma Max Lovitt Kelly Deng ... Yunyu Xiao Ying Ding Xuhai Xu Joydeep Ghosh Yifan Peng 49 0 0 07 Aug 2025
Benchmarking Foundation Models for Mitotic Figure Classification Jonas Ammeling J. Ganz Emely Rosbach Ludwig Lausser C. Bertram Katharina Breininger Marc Aubreville OOD 116 1 0 06 Aug 2025
Large Language Model's Multi-Capability Alignment in Biomedical Domain Weilei Wang Linqing Chen Hanmeng Zhong Wentao Wu LM&MA ELM 95 0 0 06 Aug 2025
User Perception of Attention Visualizations: Effects on Interpretability Across Evidence-Based Medical Documents Andrés Carvallo Denis Parra Peter Brusilovsky Hernan Valdivieso G. Rada Ivania Donoso Vladimir Araujo 84 0 0 05 Aug 2025
RooseBERT: A New Deal For Political Language Modelling Deborah Dore Elena Cabrio S. Villata 120 0 0 05 Aug 2025
Data Overdose? Time for a Quadruple Shot: Knowledge Graph Construction using Enhanced Triple Extraction Taine J. Elliott Stephen P. Levitt Ken Nixon Martin Bekker 81 0 0 05 Aug 2025
Automated SNOMED CT Concept Annotation in Clinical Text Using Bi-GRU Neural Networks Ali Noori Pratik Devkota Somya Mohanty Prashanti Manda 44 0 0 04 Aug 2025
OpenMed NER: Open-Source, Domain-Adapted State-of-the-Art Transformers for Biomedical NER Across 12 Public Datasets Maziyar Panahi MedIm VLM AI4CE 127 0 0 03 Aug 2025