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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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PMOA-TTS: Introducing the PubMed Open Access Textual Times Series Corpus Shahriar Noroozizadeh Sayantan Kumar George H. Chen Jeremy C. Weiss 188 0 0 23 May 2025
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Any-to-Any Learning in Computational Pathology via Triplet Multimodal Pretraining Qichen Sun Zhengrui Guo Rui Peng Hao Chen Jinzhuo Wang MedIm 329 0 0 19 May 2025
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Diffmv: A Unified Diffusion Framework for Healthcare Predictions with Random Missing Views and View Laziness Chuang Zhao Hui Tang Hongke Zhao Xiaomeng Li DiffM MedIm 170 0 0 17 May 2025
Fine-grained Contrastive Learning for ECG-Report Alignment with Waveform Enhancement Haitao Li Che Liu Zhengyao Ding Ziyi Liu Wenqi Shao Zhengxing Huang 208 1 0 17 May 2025
MedGUIDE: Benchmarking Clinical Decision-Making in Large Language Models Xiaomin Li Mingye Gao Yuexing Hao Taoran Li Guangya Wan Zihan Wang Yijun Wang LM&MA ELM AI4MH 330 5 0 16 May 2025
SECRET: Semi-supervised Clinical Trial Document Similarity SearchAnnual Meeting of the Association for Computational Linguistics (ACL), 2025 Trisha Das Afrah Shafquat Beigi Mandis Jacob Aptekar Jimeng Sun 168 0 0 16 May 2025
Demystifying AI Agents: The Final Generation of Intelligence Kevin J McNamara Rhea Pritham Marpu 178 2 0 15 May 2025
TrialMatchAI: An End-to-End AI-powered Clinical Trial Recommendation System to Streamline Patient-to-Trial Matching Majd Abdallah Sigve Nakken Mariska Bierkens Johanna Galvis Alexis Groppi ... Rodrigo Dienstmann Remond Fijneman Eivind Hovig Gerrit Meijer Macha Nikolski 185 2 0 13 May 2025
HAMLET: Healthcare-focused Adaptive Multilingual Learning Embedding-based Topic Modeling Hajar Sakai Sarah Lam 264 0 0 12 May 2025
Efficient and Reproducible Biomedical Question Answering using Retrieval Augmented GenerationSwiss Conference on Data Science (SDS), 2025 Linus Stuhlmann Michael Alexander Saxer Jonathan Fürst RALM 182 3 0 12 May 2025
Chronocept: Instilling a Sense of Time in Machines Krish Goel Sanskar Pandey KS Mahadevan Harsh Kumar Vishesh Khadaria 271 0 0 12 May 2025
KDH-MLTC: Knowledge Distillation for Healthcare Multi-Label Text Classification Hajar Sakai Sarah Lam VLM 330 0 0 12 May 2025
Bridging Large Language Models and Single-Cell Transcriptomics in Dissecting Selective Motor Neuron Vulnerability Douglas Jiang Zilin Dai Luxuan Zhang Qiyi Yu Haoqi Sun Feng Tian 101 1 0 12 May 2025
CheXLearner: Text-Guided Fine-Grained Representation Learning for Progression Detection Yanjie Wang Junwen Duan Xinyu Li Jianxin Wang MedIm 209 0 0 11 May 2025
CellVerse: Do Large Language Models Really Understand Cell Biology? Fan Zhang Tianyu Liu Zhihong Zhu Yu Wang Haoyu Wang Donghao Zhou Yefeng Zheng Kun Wang X. Wu Pheng-Ann Heng ELM 173 3 0 09 May 2025
CDE-Mapper: Using Retrieval-Augmented Language Models for Linking Clinical Data Elements to Controlled Vocabularies Komal Gilani Marlo Verket Christof Peters Michel Dumontier Hans-Peter Brunner-La Rocca V. Urovi 256 0 0 07 May 2025
HiPerRAG: High-Performance Retrieval Augmented Generation for Scientific InsightsPlatform for Advanced Scientific Computing Conference (PASC), 2025 Ozan Gokdemir Carlo Siebenschuh Alexander Brace Azton Wells Brian Hsu ... A. Anandkumar Ian Foster R. Stevens V. Vishwanath A. Ramanathan VLM 191 9 0 07 May 2025
Knowledge Augmented Complex Problem Solving with Large Language Models: A Survey Da Zheng Lun Du Junwei Su Yuchen Tian Yuqi Zhu Jintian Zhang Lanning Wei Xin Xu Ningyu Zhang LRM 469 5 0 06 May 2025
An Automated LLM-based Pipeline for Asset-Level Database Creation to Assess Deforestation Impact Avanija Menon Ovidiu Serban 161 0 0 05 May 2025
Retrieval-augmented in-context learning for multimodal large language models in disease classification Zaifu Zhan Shuang Zhou Xiaoshan Zhou Yongkang Xiao Jun Wang Jiawen Deng He Zhu Yu Hou Rui Zhang 230 5 0 04 May 2025
Aligning Large Language Models with Healthcare Stakeholders: A Pathway to Trustworthy AI Integration Kexin Ding Mu Zhou Akshay Chaudhari Shaoting Zhang Dimitris N. Metaxas LM&MA 223 0 0 02 May 2025
Zero-Shot Document-Level Biomedical Relation Extraction via Scenario-based Prompt Design in Two-Stage with LLM Lei Zhao Ling Kang Quan Guo 149 1 0 02 May 2025
Knowledge-augmented Pre-trained Language Models for Biomedical Relation ExtractionBMC Bioinformatics (BMC Bioinformatics), 2025 Mario Sanger Ulf Leser 228 2 0 01 May 2025
AdCare-VLM: Towards a Unified and Pre-aligned Latent Representation for Healthcare Video Understanding Md Asaduzzaman Jabin Hanqi Jiang Yuchen Ren Patrick Kaggwa Eugene Douglass Juliet N. Sekandi Tianming Liu LM&MA 416 0 0 01 May 2025
Enhancing Security and Strengthening Defenses in Automated Short-Answer Grading SystemsWorkshop on Innovative Use of NLP for Building Educational Applications (UNBEA), 2025 Sahar Yarmohammadtoosky Yiyun Zhou Victoria Yaneva Peter Baldwin Saed Rezayi Brian Clauser Polina Harikeo AAML 144 0 0 30 Apr 2025
Revisiting the MIMIC-IV Benchmark: Experiments Using Language Models for Electronic Health Records Jesus Lovon Thouria Ben-Haddi Jules Di Scala José G. Moreno L. Tamine 251 4 0 29 Apr 2025
Llama-3.1-FoundationAI-SecurityLLM-Base-8B Technical Report Paul Kassianik Baturay Saglam Alexander Chen Blaine Nelson Anu Vellore ... Hyrum Anderson Kojin Oshiba Omar Santos Yaron Singer Amin Karbasi PILM 246 15 0 28 Apr 2025
Hallucinations and Key Information Extraction in Medical Texts: A Comprehensive Assessment of Open-Source Large Language Models Anindya Bijoy Das Shibbir Ahmed Shahnewaz Karim Sakib HILM LM&MA 295 5 0 27 Apr 2025
Advancing Scientific Text Classification: Fine-Tuned Models with Dataset Expansion and Hard-VotingInternational Symposium on Applied Machine Intelligence and Informatics (SAMI), 2025 Z. R. K. Rostam Gábor Kertész 201 1 0 26 Apr 2025
PatientDx: Merging Large Language Models for Protecting Data-Privacy in Healthcare José G. Moreno Jesus Lovon M'Rick Robin-Charlet Christine Damase-Michel L. Tamine MoMe LM&MA 312 0 0 24 Apr 2025
HMI: Hierarchical Knowledge Management for Efficient Multi-Tenant Inference in Pretrained Language ModelsThe VLDB journal (VLDB J.), 2025 Junxuan Zhang Jiadong Wang Haoyang Li Lidan Shou Ke Chen Gang Chen Qin Xie Guiming Xie Xuejian Gong 140 1 0 24 Apr 2025
Towards Harnessing the Collaborative Power of Large and Small Models for Domain Tasks Yang Liu Bingjie Yan Tianyuan Zou Jianqing Zhang Zixuan Gu ... Jiajian Li Xiaozhou Ye Ye Ouyang Qiang Yang Yanzhe Zhang ALM 986 2 0 24 Apr 2025
T-VEC: A Telecom-Specific Vectorization Model with Enhanced Semantic Understanding via Deep Triplet Loss Fine-Tuning Vignesh Ethiraj Ashwath David Sidhanth Menon Divya Vijay Vidhyakshaya Kannan 177 2 0 23 Apr 2025
From Promising Capability to Pervasive Bias: Assessing Large Language Models for Emergency Department Triage Joseph Lee Tianqi Shang Jae Young Baik D. Duong-Tran Shu Yang Jinkui Chi Li Shen 847 1 0 22 Apr 2025
EIoU-EMC: A Novel Loss for Domain-specific Nested Entity RecognitionAnnual International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR), 2025 Jian Zhang Tianqing Zhang Qi Li Hongwei Wang 161 0 0 19 Apr 2025
Continual Pre-Training is (not) What You Need in Domain Adaption Pin-Er Chen Da-Chen Lian S. Hsieh Sieh-Chuen Huang Hsuan-Lei Shao ... Yang-Hsien Lin Zih-Ching Chen Cheng-Kuang Eddie TC Huang Simon See CLL AILaw 278 1 0 18 Apr 2025
EyecareGPT: Boosting Comprehensive Ophthalmology Understanding with Tailored Dataset, Benchmark and Model Sijing Li Tianwei Lin Lingshuai Lin Weinan Zhang Jiang Liu ... Yucheng He Xiaohui Song Jun Xiao Yueting Zhuang Beng Chin Ooi LM&MA 125 12 0 18 Apr 2025
A Scoping Review of Natural Language Processing in Addressing Medically Inaccurate Information: Errors, Misinformation, and HallucinationJournal of Biomedical Informatics (JBI), 2025 Zhaoyi Sun Wen-wai Yim Özlem Uzuner Fei Xia Meliha Yetisgen 442 3 0 16 Apr 2025
Streamlining Biomedical Research with Specialized LLMs Linqing Chen Wentao Wu Yubin Xia Weilei Wang Peng Xu ... Lisha Zhang Fu Bian Zhongkai Ye Lidong Pei Changyang Tu 138 3 0 15 Apr 2025
Can We Edit LLMs for Long-Tail Biomedical Knowledge? Xinhao Yi Jake Lever Kevin Bryson Zaiqiao Meng KELM 207 2 0 14 Apr 2025
Reduction of Supervision for Biomedical Knowledge DiscoveryBMC Bioinformatics (BMC Bioinformatics), 2025 Christos Theodoropoulos Andrei Catalin Coman James Henderson Marie-Francine Moens 162 0 0 13 Apr 2025
Application of Contrastive Learning on ECG Data: Evaluating Performance in Japanese and Classification with Around 100 Labels Junichiro Takahashi JingChuan Guan Masataka Sato Kaito Baba Kazuto Haruguchi Daichi Nagashima Satoshi Kodera Norihiko Takeda 169 1 0 12 Apr 2025
Langformers: Unified NLP Pipelines for Language Models Rabindra Lamsal M. Read S. Karunasekera KELM AI4CE 100 0 0 12 Apr 2025
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling Yuanyun Zhang Shi Li 210 1 0 10 Apr 2025
RadZero: Similarity-Based Cross-Attention for Explainable Vision-Language Alignment in Chest X-ray with Zero-Shot Multi-Task Capability Jonggwon Park Soobum Kim Byungmu Yoon Kyoyun Choi MedIm 411 0 0 10 Apr 2025
DynClean: Training Dynamics-based Label Cleaning for Distantly-Supervised Named Entity RecognitionNorth American Chapter of the Association for Computational Linguistics (NAACL), 2025 Qi Zhang Huitong Pan Zhijia Chen Longin Jan Latecki Cornelia Caragea Eduard Constantin Dragut 261 1 0 06 Apr 2025