BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 488 papers shown

Title
An Automatic SOAP Classification System Using Weakly Supervision And Transfer Learning Sunjae Kwon Zhichao Yang Hong-ye Yu 21 2 0 26 Nov 2022
Evaluating the Knowledge Dependency of Questions Hyeongdon Moon Yoonseok Yang Jamin Shin Hangyeol Yu Seunghyun Lee Myeongho Jeong Juneyoung Park Minsam Kim Seungtaek Choi AI4Ed 23 10 0 21 Nov 2022
AF Adapter: Continual Pretraining for Building Chinese Biomedical Language Model Yongyu Yan Kui Xue Xiaoming Shi Qi Ye Jingping Liu Tong Ruan CLL 42 1 0 21 Nov 2022
Context Variance Evaluation of Pretrained Language Models for Prompt-based Biomedical Knowledge Probing Zonghai Yao Yi Cao Zhichao Yang Hong-ye Yu 14 17 0 18 Nov 2022
CDialog: A Multi-turn Covid-19 Conversation Dataset for Entity-Aware Dialog Generation Deeksha Varshney Aizan Zafar Niranshu Kumar Behra Asif Ekbal 21 6 0 16 Nov 2022
Lesion Guided Explainable Few Weak-shot Medical Report Generation Jinghan Sun Dong Wei Liansheng Wang Yefeng Zheng MedIm 16 12 0 16 Nov 2022
Textual Data Augmentation for Patient Outcomes Prediction Qiuhao Lu Dejing Dou Thien Huu Nguyen 11 15 0 13 Nov 2022
A Survey of Knowledge Enhanced Pre-trained Language Models Linmei Hu Zeyi Liu Ziwang Zhao Lei Hou Liqiang Nie Juanzi Li KELM VLM 24 121 0 11 Nov 2022
Hardness-guided domain adaptation to recognise biomedical named entities under low-resource scenarios Ngoc Dang Nguyen Lan Du Wray L. Buntine Changyou Chen Richard Beare 23 7 0 11 Nov 2022
Combining Contrastive Learning and Knowledge Graph Embeddings to develop medical word embeddings for the Italian language Denys Amore Bondarenko Roger Ferrod Luigi Di Caro 16 1 0 09 Nov 2022
AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease Chengsheng Mao Jie Xu Luke Rasmussen Yikuan Li P. Adekkanattu ... R. Vassar Guoqian Jiang Fei Wang Jyotishman Pathak Yuan Luo 19 6 0 07 Nov 2022
BERT for Long Documents: A Case Study of Automated ICD Coding Arash Afkanpour Shabir Adeel H. Bassani Arkady Epshteyn Hongbo Fan ... Sanjana Woonna S. Zamani Elli Kanal M. Fomitchev Donny Cheung 36 14 0 04 Nov 2022
BERT-Deep CNN: State-of-the-Art for Sentiment Analysis of COVID-19 Tweets Javad Hassannataj Joloudari Sadiq Hussain M. Nematollahi Rouhollah Bagheri Fatemeh Fazl R. Alizadehsani Reza Lashgari Ashis Talukder 18 38 0 04 Nov 2022
An Easy-to-use and Robust Approach for the Differentially Private De-Identification of Clinical Textual Documents Yakini Tchouka Jean-François Couchot David Laiymani OOD 31 1 0 02 Nov 2022
CCS Explorer: Relevance Prediction, Extractive Summarization, and Named Entity Recognition from Clinical Cohort Studies Irfan Al-Hussaini D. An Albert Lee Sarah Bi Cassie S. Mitchell 9 7 0 01 Nov 2022
WHEN FLUE MEETS FLANG: Benchmarks and Large Pre-trained Language Model for Financial Domain Raj Sanjay Shah Kunal Chawla Dheeraj Eidnani Agam Shah Wendi Du S. Chava Natraj Raman Charese Smiley Jiaao Chen Diyi Yang AIFin 26 103 0 31 Oct 2022
Towards Language-driven Scientific AI José Manuél Gómez-Pérez 26 0 0 27 Oct 2022
Exploring the Value of Pre-trained Language Models for Clinical Named Entity Recognition Yuping Wu Lifeng Han Valerio Antonini Goran Nenadic 25 4 0 23 Oct 2022
BioLORD: Learning Ontological Representations from Definitions (for Biomedical Concepts and their Textual Descriptions) François Remy Kris Demuynck Thomas Demeester 11 13 0 21 Oct 2022
Towards Realistic Low-resource Relation Extraction: A Benchmark with Empirical Baseline Study Xin Xu Xiang Chen Ningyu Zhang Xin Xie Xi Chen Huajun Chen 26 10 0 19 Oct 2022
BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining Renqian Luo Liai Sun Yingce Xia Tao Qin Sheng Zhang Hoifung Poon Tie-Yan Liu MedIm AI4CE LM&MA 39 786 0 19 Oct 2022
Deep Bidirectional Language-Knowledge Graph Pretraining Michihiro Yasunaga Antoine Bosselut Hongyu Ren Xikun Zhang Christopher D. Manning Percy Liang J. Leskovec 25 193 0 17 Oct 2022
Fine-tuned Sentiment Analysis of COVID-19 Vaccine-Related Social Media Data: Comparative Study Chad A. Melton B. White Robert L. Davis R. Bednarczyk A. Shaban-Nejad 13 25 0 17 Oct 2022
Can Language Representation Models Think in Bets? Zhi–Bin Tang M. Kejriwal 15 6 0 14 Oct 2022
MiniALBERT: Model Distillation via Parameter-Efficient Recursive Transformers Mohammadmahdi Nouriborji Omid Rohanian Samaneh Kouchaki David A. Clifton 24 8 0 12 Oct 2022
MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score Sunjae Kwon Zonghai Yao H. Jordan David Levy Brian Corner Hong-ye Yu 22 18 0 12 Oct 2022
Spread Love Not Hate: Undermining the Importance of Hateful Pre-training for Hate Speech Detection Omkar Gokhale Aditya Kane Shantanu Patankar Tanmay Chavan Raviraj Joshi VLM 27 7 0 09 Oct 2022
KG-MTT-BERT: Knowledge Graph Enhanced BERT for Multi-Type Medical Text Classification Yong He Cheng Wang Shun Zhang Na Li Zhao Li Zhenyu Zeng AI4MH 39 10 0 08 Oct 2022
Short Text Pre-training with Extended Token Classification for E-commerce Query Understanding Haoming Jiang Tianyu Cao Zheng Li Cheng-hsin Luo Xianfeng Tang Qingyu Yin Danqing Zhang R. Goutam Bing Yin RALM 27 11 0 08 Oct 2022
Named Entity Recognition in Twitter: A Dataset and Analysis on Short-Term Temporal Shifts Asahi Ushio Leonardo Neves Vítor Silva Francesco Barbieri Jose Camacho-Collados 25 26 0 07 Oct 2022
Learning functional sections in medical conversations: iterative pseudo-labeling and human-in-the-loop approach Mengqian Wang Ilya Valmianski X. Amatriain Anitha Kannan 26 2 0 06 Oct 2022
Token Classification for Disambiguating Medical Abbreviations Mucahit Cevik Sanaz Jafari Mitchell Myers Savaş Yıldırım 14 0 0 05 Oct 2022
Understanding Prior Bias and Choice Paralysis in Transformer-based Language Representation Models through Four Experimental Probes Ke Shen M. Kejriwal 27 4 0 03 Oct 2022
DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing Yanjun Gao Dmitriy Dligach Timothy A. Miller John R. Caskey Brihat Sharma M. Churpek Majid Afshar ELM LRM 34 17 0 29 Sep 2022
Improving Radiology Report Generation Systems by Removing Hallucinated References to Non-existent Priors Vignav Ramesh Nathan Chi Pranav Rajpurkar MedIm 28 48 0 27 Sep 2022
Variational Open-Domain Question Answering Valentin Liévin Andreas Geert Motzfeldt Ida Riis Jensen Ole Winther OOD BDL 31 8 0 23 Sep 2022
Generalizing through Forgetting -- Domain Generalization for Symptom Event Extraction in Clinical Notes Sitong Zhou K. Lybarger Meliha Yetisgen-Yildiz Mari Ostendorf 34 2 0 20 Sep 2022
Automated MeSH Term Suggestion for Effective Query Formulation in Systematic Reviews Literature Search Shuai Wang Harrisen Scells Bevan Koopman Guido Zuccon AI4CE 21 17 0 19 Sep 2022
Dataset Inference for Self-Supervised Models Adam Dziedzic Haonan Duan Muhammad Ahmad Kaleem Nikita Dhawan Jonas Guan Yannis Cattan Franziska Boenisch Nicolas Papernot 24 26 0 16 Sep 2022
Toward Improving Health Literacy in Patient Education Materials with Neural Machine Translation Models David Oniani Sreekanth Sreekumar Renuk DeAlmeida D. DeAlmeida Vivian Hui Y. Lee Yiye Zhang Leming Zhou Yanshan Wang LM&MA 25 5 0 14 Sep 2022
Prompt Combines Paraphrase: Teaching Pre-trained Models to Understand Rare Biomedical Words Hao Wang Chi-Liang Liu Nuwa Xi Sendong Zhao Meizhi Ju Shiwei Zhang Ziheng Zhang Yefeng Zheng Bing Qin Ting Liu VLM AAML LM&MA 41 6 0 14 Sep 2022
Pre-trained Language Models for the Legal Domain: A Case Study on Indian Law Shounak Paul A. Mandal Pawan Goyal Saptarshi Ghosh AILaw VLM ELM 35 45 0 13 Sep 2022
OneEE: A One-Stage Framework for Fast Overlapping and Nested Event Extraction H. Cao Jingye Li Fangfang Su Fei Li Hao Fei Shengqiong Wu Bobo Li Liang Zhao Donghong Ji 30 35 0 06 Sep 2022
Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learning Sheng Zhang Hao Cheng Jianfeng Gao Hoifung Poon 30 47 0 30 Aug 2022
Review of Natural Language Processing in Pharmacology D. Trajanov Vangel Trajkovski Makedonka Dimitrieva Jovana Dobreva Milos Jovanovik Matej Klemen Alevs vZagar Marko Robnik-vSikonja LM&MA 23 7 0 22 Aug 2022
Graph-Augmented Cyclic Learning Framework for Similarity Estimation of Medical Clinical Notes Can Zheng Yanshan Wang X. Jia 13 0 0 19 Aug 2022
An Embarrassingly Easy but Strong Baseline for Nested Named Entity Recognition Hang Yan Yu Sun Xiaonan Li Xipeng Qiu 22 28 0 09 Aug 2022
A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Prediction Weimin Lyu Xinyu Dong Rachel Wong Songzhu Zheng Kayley Abell-Hart Fusheng Wang Chao Chen 15 47 0 09 Aug 2022
Fine-Tuning BERT for Automatic ADME Semantic Labeling in FDA Drug Labeling to Enhance Product-Specific Guidance Assessment Yiwen Shi Jing Wang Ping Ren Taha ValizadehAslani Yi Zhang Meng Hu Hualou Liang AI4MH AAML 22 16 0 25 Jul 2022
PanGu-Coder: Program Synthesis with Function-Level Language Modeling Fenia Christopoulou Gerasimos Lampouras Milan Gritta Guchun Zhang Yinpeng Guo ... Guangtai Liang Jia Wei Xin Jiang Qianxiang Wang Qun Liu ELM SyDa ALM 45 74 0 22 Jul 2022