BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 474 papers shown

Title
Privacy-Preserving Prompt Tuning for Large Language Model Services Yansong Li Zhixing Tan Yang Liu SILM VLM 45 63 0 10 May 2023
GersteinLab at MEDIQA-Chat 2023: Clinical Note Summarization from Doctor-Patient Conversations through Fine-tuning and In-context Learning Xiangru Tang Andrew Tran Jeffrey Tan Mark B. Gerstein 16 7 0 08 May 2023
SANTA: Separate Strategies for Inaccurate and Incomplete Annotation Noise in Distantly-Supervised Named Entity Recognition Shuzheng Si Zefan Cai Shuang Zeng Guoqiang Feng Jiaxing Lin Baobao Chang 29 4 0 06 May 2023
From Zero to Hero: Harnessing Transformers for Biomedical Named Entity Recognition in Zero- and Few-shot Contexts Milos Kosprdic Nikola Prodanović Adela Ljajić Bojana Bašaragin Nikola Milosevic MedIm 18 5 0 05 May 2023
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text K. D. Baksi Vatsala Pokhrel Bhusan K. Kuntal S. Mande 16 0 0 27 Apr 2023
A Biomedical Entity Extraction Pipeline for Oncology Health Records in Portuguese Hugo Sousa Arian Pasquali A. Jorge Catarina Sousa Santos Mário Amorim Lopes 23 1 0 18 Apr 2023
AGI for Agriculture Guoyu Lu Sheng R. Li Gengchen Mai Jin Sun Dajiang Zhu ... R. Xu Daniel Petti Changying Li Tianming Liu Changying Li AI4CE 45 17 0 12 Apr 2023
FrenchMedMCQA: A French Multiple-Choice Question Answering Dataset for Medical domain Yanis Labrak Adrien Bazoge Richard Dufour Mickael Rouvier Emmanuel Morin B. Daille P. Gourraud 19 30 0 09 Apr 2023
Are Large Language Models Ready for Healthcare? A Comparative Study on Clinical Language Understanding Yuqing Wang Yun Zhao Linda R. Petzold AI4MH LM&MA ELM 24 50 0 09 Apr 2023
DrBERT: A Robust Pre-trained Model in French for Biomedical and Clinical domains Yanis Labrak Adrien Bazoge Richard Dufour Mickael Rouvier Emmanuel Morin B. Daille P. Gourraud LM&MA 15 54 0 03 Apr 2023
GPT-4 can pass the Korean National Licensing Examination for Korean Medicine Doctors Dongyeop Jang Tae-Rim Yun Choong-Yeol Lee Young-Kyu Kwon Chang-Eop Kim ELM LM&MA 24 26 0 31 Mar 2023
BloombergGPT: A Large Language Model for Finance Shijie Wu Ozan Irsoy Steven Lu Vadim Dabravolski Mark Dredze Sebastian Gehrmann P. Kambadur David S. Rosenberg Gideon Mann AIFin 71 785 0 30 Mar 2023
oBERTa: Improving Sparse Transfer Learning via improved initialization, distillation, and pruning regimes Daniel Fernando Campos Alexandre Marques Mark Kurtz Chengxiang Zhai VLM AAML 13 2 0 30 Mar 2023
An Information Extraction Study: Take In Mind the Tokenization! Christos Theodoropoulos Marie-Francine Moens 27 6 0 27 Mar 2023
Lay Text Summarisation Using Natural Language Processing: A Narrative Literature Review Oliver Vinzelberg M. Jenkins Gordon Morison David McMinn Z. Tieges 27 6 0 24 Mar 2023
Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy Shan Chen Marco Guevara N. Ramirez Arpi Murray J. Warner Hugo J. W. L. Aerts Timothy A. Miller G. Savova Raymond H. Mak Danielle S. Bitterman 26 12 0 24 Mar 2023
JaCoText: A Pretrained Model for Java Code-Text Generation Jessica Nayeli López Espejel Mahaman Sanoussi Yahaya Alassan Walid Dahhane E. Ettifouri 29 3 0 22 Mar 2023
Applying unsupervised keyphrase methods on concepts extracted from discharge sheets Hoda Memarzadeh Nasser Ghadiri Matthias Samwald Maryam Lotfi Shahreza 36 0 0 15 Mar 2023
Generating multiple-choice questions for medical question answering with distractors and cue-masking Damien Sileo Kanimozhi Uma Marie-Francine Moens 35 5 0 13 Mar 2023
FiTs: Fine-grained Two-stage Training for Knowledge-aware Question Answering Qichen Ye Bowen Cao Nuo Chen Weiyuan Xu Yuexian Zou 20 16 0 23 Feb 2023
AdapterSoup: Weight Averaging to Improve Generalization of Pretrained Language Models Alexandra Chronopoulou Matthew E. Peters Alexander M. Fraser Jesse Dodge MoMe 21 65 0 14 Feb 2023
Expediting Distributed DNN Training with Device Topology-Aware Graph Deployment Shiwei Zhang Xiaodong Yi Lansong Diao Chuan Wu Siyu Wang W. Lin GNN 11 5 0 13 Feb 2023
Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes Shruthi Chari Prasanth Acharya Daniel Gruen Olivia R. Zhang Elif Eyigoz ... O. Seneviratne Fernando Jose Suarez Saiz Pablo Meyer Prithwish Chakraborty D. McGuinness 21 17 0 11 Feb 2023
Lightweight Transformers for Clinical Natural Language Processing Omid Rohanian Mohammadmahdi Nouriborji Hannah Jauncey Samaneh Kouchaki Isaric Clinical Characterisation Group Lei A. Clifton L. Merson David A. Clifton MedIm LM&MA 16 12 0 09 Feb 2023
GLADIS: A General and Large Acronym Disambiguation Benchmark Lihu Chen Gaël Varoquaux Fabian M. Suchanek ELM 29 3 0 03 Feb 2023
LIQUID: A Framework for List Question Answering Dataset Generation Seongyun Lee Hyunjae Kim Jaewoo Kang RALM 33 19 0 03 Feb 2023
Bioformer: an efficient transformer language model for biomedical text mining Li Fang Qingyu Chen Chih-Hsuan Wei Zhiyong Lu Kai Wang MedIm AI4CE 24 18 0 03 Feb 2023
Large Language Models for Biomedical Knowledge Graph Construction: Information extraction from EMR notes Vahan Arsenyan Spartak Bughdaryan Fadi Shaya Kent Small Davit Shahnazaryan 33 10 0 29 Jan 2023
ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts Minghao Xu Xinyu Yuan Santiago Miret Jian Tang AI4TS 27 95 0 28 Jan 2023
Context Matters: A Strategy to Pre-train Language Model for Science Education Zhengliang Liu Xinyue He Lei Liu Tianming Liu Xiaoming Zhai 9 40 0 27 Jan 2023
A Comparative Study of Pretrained Language Models for Long Clinical Text Yikuan Li R. M. Wehbe F. Ahmad Hanyin Wang Yuan Luo LM&MA ELM VLM MedIm 24 79 0 27 Jan 2023
Task formulation for Extracting Social Determinants of Health from Clinical Narratives Manabu Torii Ian M. Finn S. Doan Paul Wang Elly W. Yang D. Zisook 24 6 0 26 Jan 2023
Cross-lingual Argument Mining in the Medical Domain Anar Yeginbergenova Rodrigo Agerri 42 7 0 25 Jan 2023
Knowledge-augmented Graph Neural Networks with Concept-aware Attention for Adverse Drug Event Detection Shaoxiong Ji Ya Gao Pekka Marttinen GNN 19 3 0 25 Jan 2023
Semi-Automated Construction of Food Composition Knowledge Base Jason Youn Fangzhou Li I. Tagkopoulos 37 0 0 24 Jan 2023
Cross-lingual German Biomedical Information Extraction: from Zero-shot to Human-in-the-Loop Siting Liang Mareike Hartmann Daniel Sonntag 16 3 0 24 Jan 2023
SPEC5G: A Dataset for 5G Cellular Network Protocol Analysis Imtiaz Karim Kazi Samin Mubasshir Mirza Masfiqur Rahman Elisa Bertino 17 22 0 22 Jan 2023
CiT: Curation in Training for Effective Vision-Language Data Hu Xu Saining Xie Po-Yao (Bernie) Huang Licheng Yu Russ Howes Gargi Ghosh Luke Zettlemoyer Christoph Feichtenhofer VLM DiffM 30 24 0 05 Jan 2023
A Comprehensive Study of Gender Bias in Chemical Named Entity Recognition Models Xingmeng Zhao A. Niazi Anthony Rios 23 2 0 24 Dec 2022
Neural Rankers for Effective Screening Prioritisation in Medical Systematic Review Literature Search Shuai Wang Harrisen Scells Bevan Koopman Guido Zuccon 14 23 0 18 Dec 2022
The Effects of In-domain Corpus Size on pre-training BERT Chris Sanchez Zheyu Zhang AI4CE 8 4 0 15 Dec 2022
G-MAP: General Memory-Augmented Pre-trained Language Model for Domain Tasks Zhongwei Wan Yichun Yin Wei Zhang Jiaxin Shi Lifeng Shang Guangyong Chen Xin Jiang Qun Liu VLM CLL 28 16 0 07 Dec 2022
Truthful Meta-Explanations for Local Interpretability of Machine Learning Models Ioannis Mollas Nick Bassiliades Grigorios Tsoumakas 16 3 0 07 Dec 2022
Intent Recognition in Conversational Recommender Systems Sahar Moradizeyveh 37 5 0 06 Dec 2022
CliMedBERT: A Pre-trained Language Model for Climate and Health-related Text Babak Jalalzadeh Hasan A. BellSadid 10 7 0 01 Dec 2022
CultureBERT: Measuring Corporate Culture With Transformer-Based Language Models Sebastian P. Koch Stefan Pasch VLM 17 5 0 01 Dec 2022
Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework Wonjin Yoon Richard Jackson Elliot Ford V. Poroshin Jaewoo Kang 21 3 0 01 Dec 2022
BudgetLongformer: Can we Cheaply Pretrain a SotA Legal Language Model From Scratch? Joel Niklaus Daniele Giofré 27 11 0 30 Nov 2022
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning Ling Luo Chih-Hsuan Wei Po-Ting Lai Robert Leaman Qingyu Chen Zhiyong Lu 20 29 0 30 Nov 2022
Evaluating the Knowledge Dependency of Questions Hyeongdon Moon Yoonseok Yang Jamin Shin Hangyeol Yu Seunghyun Lee Myeongho Jeong Juneyoung Park Minsam Kim Seungtaek Choi AI4Ed 23 10 0 21 Nov 2022