BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 474 papers shown

Title
AlpaPICO: Extraction of PICO Frames from Clinical Trial Documents Using LLMs Madhusudan Ghosh Shrimon Mukherjee Asmit Ganguly Partha Basuchowdhuri S. Naskar Debasis Ganguly 34 7 0 15 Sep 2024
Towards understanding evolution of science through language model series Junjie Dong Zhuoqi Lyu Qing Ke AI4TS 35 0 0 15 Sep 2024
DomURLs_BERT: Pre-trained BERT-based Model for Malicious Domains and URLs Detection and Classification Abdelkader El Mahdaouy Salima Lamsiyah Meryem Janati Idrissi H. Alami Zakaria Yartaoui Ismail Berrada 16 3 0 13 Sep 2024
A Simplified Retriever to Improve Accuracy of Phenotype Normalizations by Large Language Models D. B. Hier Thanh Son Do Tayo Obafemi-Ajayi 26 1 0 11 Sep 2024
A Small Claims Court for the NLP: Judging Legal Text Classification Strategies With Small Datasets Mariana Y. Noguti Edduardo Vellasques Luiz Eduardo Soares de Oliveira AILaw 46 1 0 09 Sep 2024
LLM-3D Print: Large Language Models To Monitor and Control 3D Printing Yayati Jadhav P. Pak Amir Barati Farimani AI4CE 84 8 0 26 Aug 2024
BERT's Conceptual Cartography: Mapping the Landscapes of Meaning Nina Haket Ryan Daniels 32 0 0 13 Aug 2024
High-Throughput Phenotyping of Clinical Text Using Large Language Models D. B. Hier S. I. Munzir Anne Stahlfeld Tayo Obafemi-Ajayi M. Carrithers LM&MA 43 1 0 02 Aug 2024
Harvesting Textual and Structured Data from the HAL Publication Repository Francis Kulumba Wissam Antoun Guillaume Vimont Laurent Romary 32 2 0 30 Jul 2024
A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model Yingxue Xu Yihui Wang Fengtao Zhou Jiabo Ma Shu Yang ... Anjia Han Ronald Cheong Kin Chan Li Liang Xiuming Zhang Hao Chen 34 14 0 22 Jul 2024
Generation and De-Identification of Indian Clinical Discharge Summaries using LLMs Sanjeet Singh Shreya Gupta Niralee Gupta Naimish Sharma Lokesh Srivastava Vibhu Agarwal Ashutosh Modi 29 0 0 08 Jul 2024
BadCLM: Backdoor Attack in Clinical Language Models for Electronic Health Records Weimin Lyu Zexin Bi Fusheng Wang Chao Chen 42 5 0 06 Jul 2024
MedPix 2.0: A Comprehensive Multimodal Biomedical Data set for Advanced AI Applications Irene Siragusa Salvatore Contino Massimo La Ciura Rosario Alicata Roberto Pirrone 52 3 0 03 Jul 2024
Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges Mahmoud Ibrahim Yasmina Al Khalil S. Amirrajab Chang Sun M. Breeuwer J. Pluim Bart Elen Gokhan Ertaylan Michel Dumontier SyDa MedIm 33 7 0 27 Jun 2024
MU-Bench: A Multitask Multimodal Benchmark for Machine Unlearning Jiali Cheng Hadi Amiri BDL 43 3 0 21 Jun 2024
Predicting Genetic Mutation from Whole Slide Images via Biomedical-Linguistic Knowledge Enhanced Multi-label Classification Gexin Huang Chenfei Wu Mingjie Li Xiaojun Chang Ling-Hao Chen Ying Sun Shen Zhao Xiaodan Liang Liang Lin MedIm 29 0 0 05 Jun 2024
Towards Effective Time-Aware Language Representation: Exploring Enhanced Temporal Understanding in Language Models Jiexin Wang Adam Jatowt Yi Cai AI4CE 35 1 0 04 Jun 2024
Predicting Drug-Gene Relations via Analogy Tasks with Word Embeddings Hiroaki Yamagiwa Ryoma Hashimoto Kiwamu Arakane Ken Murakami Shou Soeda Momose Oyama Mariko Okada Hidetoshi Shimodaira Hidetoshi Shimodaira 36 0 0 03 Jun 2024
Enhancing Antibiotic Stewardship using a Natural Language Approach for Better Feature Representation Simon A. Lee Trevor Brokowski Jeffrey N. Chiang 29 8 0 30 May 2024
A Survey of Deep Learning-based Radiology Report Generation Using Multimodal Data Xinyi Wang Grazziela Figueredo Ruizhe Li W. Zhang Weitong Chen Xin Chen MedIm ViT 49 2 0 21 May 2024
MedConceptsQA: Open Source Medical Concepts QA Benchmark Ofir Ben Shoham Nadav Rappoport AI4MH ELM 37 5 0 12 May 2024
Large Language Model Agent as a Mechanical Designer Yayati Jadhav A. Farimani AI4CE LLMAG 98 9 0 26 Apr 2024
"I Wish There Were an AI": Challenges and AI Potential in Cancer Patient-Provider Communication Ziqi Yang Xuhai Xu Bingsheng Yao Jiachen Li Jennifer Bagdasarian G. Gao Dakuo Wang 27 3 0 20 Apr 2024
Unveiling LLM Evaluation Focused on Metrics: Challenges and Solutions Taojun Hu Xiao-Hua Zhou ELM 38 12 0 14 Apr 2024
Navigating the Landscape of Large Language Models: A Comprehensive Review and Analysis of Paradigms and Fine-Tuning Strategies Benjue Weng LM&MA 41 7 0 13 Apr 2024
Comprehensive Study on German Language Models for Clinical and Biomedical Text Understanding Ahmad Idrissi-Yaghir Amin Dada Henning Schafer Kamyar Arzideh Giulia Baldini ... Peter A. Horn Christin Seifert F. Nensa Jens Kleesiek Christoph M. Friedrich AI4MH 29 2 0 08 Apr 2024
SemEval-2024 Task 2: Safe Biomedical Natural Language Inference for Clinical Trials Mael Jullien Marco Valentino André Freitas LM&MA 38 41 0 07 Apr 2024
Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information Gilchan Park S. McCorkle Carlos Soto Ian K. Blaby Shinjae Yoo 22 6 0 08 Mar 2024
Large Language Models(LLMs) on Tabular Data: Prediction, Generation, and Understanding -- A Survey Xi Fang Weijie Xu Fiona Anting Tan Jiani Zhang Ziqing Hu Yanjun Qi Scott Nickleach Diego Socolinsky Srinivasan H. Sengamedu Christos Faloutsos LMTD ALM 37 66 0 27 Feb 2024
JMLR: Joint Medical LLM and Retrieval Training for Enhancing Reasoning and Professional Question Answering Capability Junda Wang Zhichao Yang Zonghai Yao Hong-ye Yu BDL AI4MH LRM 40 30 0 27 Feb 2024
From Text to Transformation: A Comprehensive Review of Large Language Models' Versatility Pravneet Kaur Gautam Siddharth Kashyap Ankit Kumar Md. Tabrez Nafis Sandeep Kumar Vikrant Shokeen LM&MA 48 54 0 25 Feb 2024
An Evaluation of Large Language Models in Bioinformatics Research Hengchuang Yin Zhonghui Gu Fanhao Wang Yiparemu Abuduhaibaier Yanqiao Zhu Xinming Tu Xian-Sheng Hua Xiao Luo Yizhou Sun LM&MA 36 8 0 21 Feb 2024
How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction? Aviv Brokman Ramakanth Kavuluru LM&MA ALM 34 3 0 21 Feb 2024
A Novel BERT-based Classifier to Detect Political Leaning of YouTube Videos based on their Titles Nouar Aldahoul Talal Rahwan Yasir Zaki 24 0 0 16 Feb 2024
Text-to-Code Generation with Modality-relative Pre-training Fenia Christopoulou Guchun Zhang Gerasimos Lampouras AI4TS 18 1 0 08 Feb 2024
Pretrained Generative Language Models as General Learning Frameworks for Sequence-Based Tasks Ben Fauber 21 2 0 08 Feb 2024
How Useful is Continued Pre-Training for Generative Unsupervised Domain Adaptation? Rheeya Uppaal Yixuan Li Junjie Hu 37 4 0 31 Jan 2024
Credit Risk Meets Large Language Models: Building a Risk Indicator from Loan Descriptions in P2P Lending Mario Sanz-Guerrero Javier Arroyo 28 4 0 29 Jan 2024
Fine-tuning Strategies for Domain Specific Question Answering under Low Annotation Budget Constraints Kunpeng Guo Dennis Diefenbach Antoine Gourru Christophe Gravier 23 0 0 17 Jan 2024
Zero-shot Generative Large Language Models for Systematic Review Screening Automation Shuai Wang Harrisen Scells Shengyao Zhuang Martin Potthast Bevan Koopman Guido Zuccon 25 12 0 12 Jan 2024
One Model to Rule them All: Towards Universal Segmentation for Medical Images with Text Prompts Ziheng Zhao Yao Zhang Chaoyi Wu Xiaoman Zhang Ya-Qin Zhang Yanfeng Wang Weidi Xie VLM MedIm 32 37 0 28 Dec 2023
Robust Knowledge Extraction from Large Language Models using Social Choice Theory Nico Potyka Yuqicheng Zhu Yunjie He Evgeny Kharlamov Steffen Staab 24 3 0 22 Dec 2023
Collaborative Synthesis of Patient Records through Multi-Visit Health State Inference Hongda Sun Hongzhan Lin Rui Yan SyDa 27 2 0 22 Dec 2023
UniDCP: Unifying Multiple Medical Vision-language Tasks via Dynamic Cross-modal Learnable Prompts Chenlu Zhan Yufei Zhang Yu Lin Gaoang Wang Hongwei Wang VLM MedIm 28 5 0 18 Dec 2023
Labrador: Exploring the Limits of Masked Language Modeling for Laboratory Data David R. Bellamy Bhawesh Kumar Cindy Wang Andrew L. Beam MedIm 28 3 0 09 Dec 2023
Gene-MOE: A sparsely gated prognosis and classification framework exploiting pan-cancer genomic information Xiangyu Meng Xue Li Qing Yang Huanhuan Dai Lian Qiao Hongzhen Ding Long Hao Xun Wang 11 0 0 29 Nov 2023
De-identification of clinical free text using natural language processing: A systematic review of current approaches Aleksandar Kovacevic Bojana Bašaragin Nikola Milosevic Goran Nenadic OOD 23 17 0 28 Nov 2023
German FinBERT: A German Pre-trained Language Model Moritz Scherrmann 30 0 0 15 Nov 2023
PolyIE: A Dataset of Information Extraction from Polymer Material Scientific Literature Jerry Junyang Cheung Yuchen Zhuang Yinghao Li Pranav Shetty Wantian Zhao Sanjeev Grampurohit R. Ramprasad Chao Zhang AI4CE 10 11 0 13 Nov 2023
Automatic Report Generation for Histopathology images using pre-trained Vision Transformers S. Sengupta Donald E. Brown VLM MedIm ViT 26 9 0 10 Nov 2023