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BioBERT: a pre-trained biomedical language representation model for
  biomedical text mining
v1v2v3v4 (latest)

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019
Jinhyuk Lee
Wonjin Yoon
Sungdong Kim
Donghyeon Kim
Sunkyu Kim
Chan Ho So
Jaewoo Kang
    OOD
ArXiv (abs)PDFHTMLGithub (689★)

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 1,900 papers shown
Repurposing Annotation Guidelines to Instruct LLM Annotators: A Case Study
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Rezarta Islamaj
Jin-Dong Kim
Florian Boudin
Akiko Aizawa
117
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GapDNER: A Gap-Aware Grid Tagging Model for Discontinuous Named Entity Recognition
GapDNER: A Gap-Aware Grid Tagging Model for Discontinuous Named Entity Recognition
Yawen Yang
Fukun Ma
Shiao Meng
Aiwei Liu
Lijie Wen
120
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13 Oct 2025
Assessing Large Language Models for Structured Medical Order Extraction
Assessing Large Language Models for Structured Medical Order Extraction
A H M Rezaul Karim
Ozlem Uzuner
126
1
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12 Oct 2025
VeritasFi: An Adaptable, Multi-tiered RAG Framework for Multi-modal Financial Question Answering
VeritasFi: An Adaptable, Multi-tiered RAG Framework for Multi-modal Financial Question Answering
Zhenghan Tai
Hanwei Wu
Qingchen Hu
Jijun Chi
Hailin He
...
Fengran Mo
Xinyue Yu
Yufei Cui
Ling Zhou
Xinyu Wang
127
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12 Oct 2025
Lightweight Baselines for Medical Abstract Classification: DistilBERT with Cross-Entropy as a Strong Default
Lightweight Baselines for Medical Abstract Classification: DistilBERT with Cross-Entropy as a Strong Default
Jiaqi Liu
Tong Wang
Su Liu
Xin Hu
Ran Tong
Lanruo Wang
Jiexi Xu
256
3
0
11 Oct 2025
Serialized EHR make for good text representations
Serialized EHR make for good text representations
Zhirong Chou
Quan Qin
Shi Li
94
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0
11 Oct 2025
A-IPO: Adaptive Intent-driven Preference Optimization
A-IPO: Adaptive Intent-driven Preference Optimization
Wenqing Wang
Muhammad Asif Ali
Ali Shoker
Ruohan Yang
Junyang Chen
Ying Sha
Huan Wang
92
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11 Oct 2025
A Unified Biomedical Named Entity Recognition Framework with Large Language Models
A Unified Biomedical Named Entity Recognition Framework with Large Language Models
Tengxiao Lv
Ling Luo
Juntao Li
Yanhua Wang
Yuchen Pan
...
Yan Jiang
Huiyi Lv
Yuanyuan Sun
Jian Wang
Hongfei Lin
88
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0
10 Oct 2025
Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physics
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Hongyi Ling
Cong Fu
Yepeng Huang
Michael Sun
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X. Qian
Heng Ji
Wei Wang
Marinka Zitnik
Shuiwang Ji
LLMAGLM&RoAI4CE
188
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Ocular-Induced Abnormal Head Posture: Diagnosis and Missing Data Imputation
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Saja Al-Dabet
Sherzod Turaev
Nazar Zaki
Arif O. Khan
Luai Eldweik
92
0
0
07 Oct 2025
ModernBERT + ColBERT: Enhancing biomedical RAG through an advanced re-ranking retriever
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Eduardo Martínez Rivera
Filippo Menolascina
RALM
151
1
0
06 Oct 2025
Contrastive Learning Using Graph Embeddings for Domain Adaptation of Language Models in the Process Industry
Contrastive Learning Using Graph Embeddings for Domain Adaptation of Language Models in the Process Industry
Anastasia Zhukova
Jonas Lührs
Christian E. Lobmüller
Bela Gipp
179
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Resource-Efficient Fine-Tuning of LLaMA-3.2-3B for Medical Chain-of-Thought Reasoning
Resource-Efficient Fine-Tuning of LLaMA-3.2-3B for Medical Chain-of-Thought Reasoning
Imran Mansha
LRMAI4MH
177
1
0
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KEEP: Integrating Medical Ontologies with Clinical Data for Robust Code Embeddings
KEEP: Integrating Medical Ontologies with Clinical Data for Robust Code EmbeddingsACM Conference on Health, Inference, and Learning (CHIL), 2025
Ahmed Elhussein
Paul Meddeb
Abigail Newbury
Jeanne Mirone
Martin Stoll
Gamze Gürsoy
CLL
127
0
0
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Evaluation of Clinical Trials Reporting Quality using Large Language Models
Evaluation of Clinical Trials Reporting Quality using Large Language Models
Mathieu Lai-king
P. Paroubek
LM&MAELM
137
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Enhancing Biomedical Named Entity Recognition using GLiNER-BioMed with Targeted Dictionary-Based Post-processing for BioASQ 2025 task 6
Enhancing Biomedical Named Entity Recognition using GLiNER-BioMed with Targeted Dictionary-Based Post-processing for BioASQ 2025 task 6
Ritesh Mehta
92
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0
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PRISM-Consult: A Panel-of-Experts Architecture for Clinician-Aligned Diagnosis
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Lionel Levine
John Santerre
Alexander S. Young
T. Barry Levine
Francis Campion
Majid Sarrafzadeh
110
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0
01 Oct 2025
Retrieval-Augmented Framework for LLM-Based Clinical Decision Support
Retrieval-Augmented Framework for LLM-Based Clinical Decision Support
Leon Garza
Anantaa Kotal
Michael A. Grasso
Emre Umucu
133
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BioVERSE: Representation Alignment of Biomedical Modalities to LLMs for Multi-Modal Reasoning
BioVERSE: Representation Alignment of Biomedical Modalities to LLMs for Multi-Modal Reasoning
Ching-Huei Tsou
Michal Ozery-Flato
Ella Barkan
Diwakar Mahajan
Ben Shapira
AI4CE
96
1
0
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ProbMed: A Probabilistic Framework for Medical Multimodal Binding
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Yuan Gao
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Jianzhong You
Chris McIntosh
145
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EchoingECG: An Electrocardiogram Cross-Modal Model for Echocardiogram Tasks
EchoingECG: An Electrocardiogram Cross-Modal Model for Echocardiogram TasksInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
Yuan Gao
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Chris McIntosh
120
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Massively Multimodal Foundation Models: A Framework for Capturing Dependencies with Specialized Mixture-of-Experts
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249
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CliniBench: A Clinical Outcome Prediction Benchmark for Generative and Encoder-Based Language Models
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Wolfgang Nejdl
Alexander Loser
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123
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Ana Paula Gomes Ferreira
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129
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Cell2Text: Multimodal LLM for Generating Single-Cell Descriptions from RNA-Seq Data
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Agentic Exploration of Physics Models
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207
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99
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RHYTHM: Reasoning with Hierarchical Temporal Tokenization for Human Mobility
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AI4TS
195
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WirelessMathLM: Teaching Mathematical Reasoning for LLMs in Wireless Communications with Reinforcement Learning
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Xin Li
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Yiyang Zhu
W. Zhang
Li Wei
Jiancheng An
Chau Yuen
LRM
72
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FoodSEM: Large Language Model Specialized in Food Named-Entity Linking
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Ana Gjorgjevikj
Matej Martinc
Gjorgjina Cenikj
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B. Korousic-Seljak
T. Eftimov
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AutoPK: Leveraging LLMs and a Hybrid Similarity Metric for Advanced Retrieval of Pharmacokinetic Data from Complex Tables and Documents
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