BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 488 papers shown

Title
Multi-Level Fine-Tuning, Data Augmentation, and Few-Shot Learning for Specialized Cyber Threat Intelligence Markus Bayer Tobias Frey Christian A. Reuter AAML 16 15 0 22 Jul 2022
Natural language processing for clusterization of genes according to their functions Vladislav Dordiuk E. Demicheva Fernando Polanco Espino K. Ushenin 11 1 0 17 Jul 2022
PLM-ICD: Automatic ICD Coding with Pretrained Language Models Chao-Wei Huang Shang-Chi Tsai Yun-Nung Chen 35 49 0 12 Jul 2022
Developing an NLP-based Recommender System for the Ethical, Legal, and Social Implications of Synthetic Biology Damien Dablain Lilian Huang Brandon Sepulvado 11 0 0 10 Jul 2022
BioTABQA: Instruction Learning for Biomedical Table Question Answering Man Luo S. Saxena Swaroop Mishra Mihir Parmar Chitta Baral LMTD 157 15 0 06 Jul 2022
Improving Low-Resource Speech Recognition with Pretrained Speech Models: Continued Pretraining vs. Semi-Supervised Training Mitchell DeHaven J. Billa VLM AI4TS 15 8 0 01 Jul 2022
GERNERMED++: Transfer Learning in German Medical NLP Johann Frei Ludwig Frei-Stuber Frank Kramer MedIm 31 8 0 29 Jun 2022
Knowledge Graph Construction and Its Application in Automatic Radiology Report Generation from Radiologist's Dictation Kaveri Kale P. Bhattacharyya A. Shetty Milind Gune Kush Shrivastava Rustom Lawyer Spriha Biswas MedIm 20 9 0 13 Jun 2022
Graph-in-Graph Network for Automatic Gene Ontology Description Generation Fenglin Liu Bang-ju Yang Chenyu You Xian Wu Shen Ge Adelaide Woicik Sheng Wang GNN 28 4 0 10 Jun 2022
SsciBERT: A Pre-trained Language Model for Social Science Texts Si Shen Jiang-fu Liu Litao Lin Ying Huang Lin Zhang Changting Liu Yu Feng Dongbo Wang 11 27 0 09 Jun 2022
Training Subset Selection for Weak Supervision Hunter Lang Aravindan Vijayaraghavan David Sontag NoLa 8 21 0 06 Jun 2022
FinBERT-MRC: financial named entity recognition using BERT under the machine reading comprehension paradigm Yuzhe Zhang Hong Zhang 45 27 0 31 May 2022
K-12BERT: BERT for K-12 education Vasu Goel Dhruv Sahnan Venktesh V Gaurav Sharma Deep Dwivedi Mukesh Mohania AI4Ed 22 5 0 24 May 2022
A reproducible experimental survey on biomedical sentence similarity: a string-based method sets the state of the art Alicia Lara-Clares Juan J. Lastra-Díaz A. García-Serrano 11 0 0 18 May 2022
PathologyBERT -- Pre-trained Vs. A New Transformer Language Model for Pathology Domain Thiago Santos Amara Tariq Susmita Das Kavyasree Vayalpati Geoffrey H. Smith Hari M. Trivedi Imon Banerjee LM&MA MedIm 6 17 0 13 May 2022
Clinical Prompt Learning with Frozen Language Models Niall Taylor Yi Zhang Dan W Joyce A. Nevado-Holgado Andrey Kormilitzin VLM LM&MA 16 31 0 11 May 2022
SuMe: A Dataset Towards Summarizing Biomedical Mechanisms Mohaddeseh Bastan N. Shankar Mihai Surdeanu Niranjan Balasubramanian 21 3 0 10 May 2022
Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework Ling Luo Chih-Hsuan Wei Po-Ting Lai Qingyu Chen R. Dogan Zhiyong Lu 17 3 0 08 May 2022
AKI-BERT: a Pre-trained Clinical Language Model for Early Prediction of Acute Kidney Injury Chengsheng Mao Liang Yao Yuan Luo 21 1 0 07 May 2022
A Dataset for N-ary Relation Extraction of Drug Combinations Aryeh Tiktinsky Vijay Viswanathan Danna Niezni D. Azagury Y. Shamay Hillel Taub-Tabib Tom Hope Yoav Goldberg 29 18 0 04 May 2022
Seed-Guided Topic Discovery with Out-of-Vocabulary Seeds Yu Zhang Yu Meng Xuan Wang Sheng Wang Jiawei Han 65 14 0 04 May 2022
POLITICS: Pretraining with Same-story Article Comparison for Ideology Prediction and Stance Detection Yujian Liu Xinliang Frederick Zhang David Wegsman Nick Beauchamp Lu Wang 30 71 0 02 May 2022
Crude Oil-related Events Extraction and Processing: A Transfer Learning Approach Meisin Lee Lay-Ki Soon Eu-Gene Siew 16 0 0 01 May 2022
Cross-modal Memory Networks for Radiology Report Generation Zhihong Chen Yaling Shen Yan Song Xiang Wan MedIm 28 246 0 28 Apr 2022
Attention Mechanism in Neural Networks: Where it Comes and Where it Goes Derya Soydaner 3DV 44 149 0 27 Apr 2022
SkillSpan: Hard and Soft Skill Extraction from English Job Postings Mike Zhang Kristian Nørgaard Jensen Sif Dam Sonniks Barbara Plank 20 53 0 27 Apr 2022
CoVERT: A Corpus of Fact-checked Biomedical COVID-19 Tweets I. Mohr Amelie Wuhrl Roman Klinger OffRL 16 25 0 26 Apr 2022
ICDBigBird: A Contextual Embedding Model for ICD Code Classification George Michalopoulos Michal Malyska Nicola Sahar Alexander Wong Helen H. Chen 17 20 0 21 Apr 2022
Decorate the Examples: A Simple Method of Prompt Design for Biomedical Relation Extraction Hui-Syuan Yeh Thomas Lavergne Pierre Zweigenbaum 21 10 0 21 Apr 2022
Recovering Patient Journeys: A Corpus of Biomedical Entities and Relations on Twitter (BEAR) Amelie Wuhrl Roman Klinger 11 4 0 21 Apr 2022
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations Qingyu Chen Alexis Allot Robert Leaman Rezarta Islamaj Dougan Jingcheng Du ... S. Pujari Mariia Chizhikova Naveen Sivadasan Naveen Sivadasan Zhiyong Lu 19 30 0 20 Apr 2022
Synthetic Target Domain Supervision for Open Retrieval QA Revanth Reddy Gangi Reddy Bhavani Iyer Md Arafat Sultan Rong Zhang Avirup Sil Vittorio Castelli Radu Florian Salim Roukos OOD 28 12 0 20 Apr 2022
LitMC-BERT: transformer-based multi-label classification of biomedical literature with an application on COVID-19 literature curation Qingyu Chen Jingcheng Du Alexis Allot Zhiyong Lu 16 25 0 19 Apr 2022
EHRKit: A Python Natural Language Processing Toolkit for Electronic Health Record Texts Irene Z Li Keen You Yujie Qiao Lucas Huang Chia-Chun Hsieh Benjamin Rosand Xiangru Tang Dragomir R. Radev 40 4 0 13 Apr 2022
BioRED: A Rich Biomedical Relation Extraction Dataset Ling Luo Po-Ting Lai Chih-Hsuan Wei C. Arighi Zhiyong Lu 39 122 0 08 Apr 2022
BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model Hongyi Yuan Zheng Yuan Ruyi Gan Jiaxing Zhang Yutao Xie Sheng Yu LM&MA 22 122 0 08 Apr 2022
PharmMT: A Neural Machine Translation Approach to Simplify Prescription Directions Jiazhao Li Corey A. Lester Xinyan Zhao Yuting Ding Yun Jiang V. Vydiswaran MedIm 21 13 0 08 Apr 2022
Paying More Attention to Self-attention: Improving Pre-trained Language Models via Attention Guiding Shanshan Wang Zhumin Chen Z. Ren Huasheng Liang Qiang Yan Pengjie Ren 25 9 0 06 Apr 2022
Global Readiness of Language Technology for Healthcare: What would it Take to Combat the Next Pandemic? Ishani Mondal Kabir Ahuja Mohit Jain Jacki O Neil Kalika Bali Monojit Choudhury ELM LM&MA 24 4 0 06 Apr 2022
Predicting Intervention Approval in Clinical Trials through Multi-Document Summarization Georgios Katsimpras G. Paliouras 14 5 0 01 Apr 2022
Entity-driven Fact-aware Abstractive Summarization of Biomedical Literature Amanuel Alambo Tanvi Banerjee K. Thirunarayan M. Raymer MedIm 13 7 0 30 Mar 2022
LinkBERT: Pretraining Language Models with Document Links Michihiro Yasunaga J. Leskovec Percy Liang KELM 12 352 0 29 Mar 2022
Predicting Clinical Intent from Free Text Electronic Health Records Kawsar Noor Katherine Smith Julia Bennett Jade OConnell Jessica Fisk ... Teresa Xu Simon Knight L. Romão Richard J. B. Dobson W. K. Wong 22 1 0 25 Mar 2022
Token Dropping for Efficient BERT Pretraining Le Hou Richard Yuanzhe Pang Tianyi Zhou Yuexin Wu Xinying Song Xiaodan Song Denny Zhou 22 42 0 24 Mar 2022
Enriching Unsupervised User Embedding via Medical Concepts Xiaolei Huang Franck Dernoncourt Mark Dredze 15 3 0 20 Mar 2022
Towards Structuring Real-World Data at Scale: Deep Learning for Extracting Key Oncology Information from Clinical Text with Patient-Level Supervision Sam Preston Mu-Hsin Wei Rajesh Rao Robert Tinn Naoto Usuyama ... Paul D. Tittel Naveen Valluri Tristan Naumann Carlo Bifulco Hoifung Poon 21 6 0 20 Mar 2022
Representation Learning for Resource-Constrained Keyphrase Generation Di Wu Wasi Uddin Ahmad Sunipa Dev Kai-Wei Chang 36 17 0 15 Mar 2022
BERTopic: Neural topic modeling with a class-based TF-IDF procedure M. Grootendorst 39 1,376 0 11 Mar 2022
Filter Drug-induced Liver Injury Literature with Natural Language Processing and Ensemble Learning Xianghao Zhan Fanjin Wang Olivier Gevaert 16 12 0 09 Mar 2022
HealthPrompt: A Zero-shot Learning Paradigm for Clinical Natural Language Processing Sonish Sivarajkumar Yanshan Wang VLM LM&MA 31 54 0 09 Mar 2022