v1v2v3v4 (latest)

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

ArXiv (abs)PDF HTML Github (689★)

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 1,898 papers shown

Title
Efficient Scientific Full Text Classification: The Case of EICAT Impact Assessments Marc Felix Brinner Sina Zarrieß 255 1 0 10 Feb 2025
KARMA: Leveraging Multi-Agent LLMs for Automated Knowledge Graph Enrichment Yuxing Lu Jinzhuo Wang 202 11 0 10 Feb 2025
Privacy-Preserving Dataset Combination Keren Fuentes Mimee Xu Irene Chen 323 0 0 09 Feb 2025
Enhancing Health Information Retrieval with RAG by Prioritizing Topical Relevance and Factual Accuracy Rishabh Uapadhyay Marco Viviani 396 16 0 07 Feb 2025
Causal Language in Observational Studies: Sociocultural Backgrounds and Team Composition Jun Wang Bei Yu CML 76 0 0 04 Feb 2025
Prompt-based Depth Pruning of Large Language Models Juyun Wee Minjae Park Jaeho Lee VLM 526 0 0 04 Feb 2025
TMI-CLNet: Triple-Modal Interaction Network for Chronic Liver Disease Prognosis From Imaging, Clinical, and Radiomic Data FusionIEEE International Symposium on Biomedical Imaging (ISBI), 2025 Linglong Wu Xuhao Shan Ruiquan Ge Ruoyu Liang Chi Zhang Yonghong Li Ahmed Elazab Huoling Luo Yunbi Liu Changmiao Wang 319 0 0 02 Feb 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and EthicsInformation Fusion (Inf. Fusion), 2023 Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Xiaoshi Zhong LM&MA AILaw 634 258 0 28 Jan 2025
DropMicroFluidAgents (DMFAs): Autonomous Droplet Microfluidic Research Framework Through Large Language Model AgentsDigital Discovery (DD), 2024 Dinh-Nguyen Nguyen Raymond Kai-Yu Tong Ngoc-Duy Dinh AI4CE 58 1 0 28 Jan 2025
MEL: Legal Spanish Language Model David Betancur Sánchez Nuria Aldama García Á. Jiménez Marta Guerrero Nieto Patricia Marsà Morales Nicolás Serrano Salas Carlos García Hernán Pablo Haya Coll Elena Montiel Ponsoda Pablo Calleja Ibáñez 227 0 0 28 Jan 2025
Scaling Large Vision-Language Models for Enhanced Multimodal Comprehension In Biomedical Image AnalysisIEEE International Symposium on Biomedical Imaging (ISBI), 2025 Robinson Umeike N. Getty Fangfang Xia Rick L. Stevens 142 3 0 28 Jan 2025
Academic case reports lack diversity: Assessing the presence and diversity of sociodemographic and behavioral factors related to Post COVID-19 ConditionPLoS ONE (PLoS ONE), 2025 Juan Andres Medina Florez Shaina Raza Rashida Lynn Zahra Shakeri Brendan T. Smith Elham Dolatabadi 351 0 0 21 Jan 2025
Neuradicon: operational representation learning of neuroimaging reports Henry Watkins Robert J. Gray Adam Julius Y. Mah W. H. Pinaya ... Jorge M. Cardoso Sebastien Ourselin Geraint Rees Rolf Jaeger P. Nachev MedIm 1.0K 3 0 20 Jan 2025
Multi-stage Training of Bilingual Islamic LLM for Neural Passage Retrieval Vera Pavlova 215 3 0 20 Jan 2025
A Comprehensive Survey of Foundation Models in MedicineIEEE Reviews in Biomedical Engineering (RBME), 2024 Wasif Khan Seowung Leem Kyle B. See Joshua K. Wong Shaoting Zhang R. Fang AI4CE LM&MA VLM 666 66 0 17 Jan 2025
KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports Hajung Kim Chanhwi Kim Jiwoong Sohn Tim Beck Marek Rei ... T Ian Simpson Joram M Posma Antoine Lain Mujeen Sung Jaewoo Kang MedIm 174 2 0 17 Jan 2025
Scaling Up ESM2 Architectures for Long Protein Sequences Analysis: Long and Quantized ApproachesBrazilian Symposium on Bioinformatics (SBB), 2024 Gabriel Bianchin de Oliveira Hélio Pedrini Z. Dias MQ 147 0 0 13 Jan 2025
Natural Language-Assisted Multi-modal Medication RecommendationInternational Conference on Information and Knowledge Management (CIKM), 2024 Jie Tan Yu Rong Kangfei Zhao Tian Bian Qifeng Bai Junzhou Huang Hong Cheng Helen Meng 271 6 0 13 Jan 2025
LLM-Net: Democratizing LLMs-as-a-Service through Blockchain-based Expert NetworksInternational Conference on Software and Computer Applications (ICSCA), 2025 Zan-Kai Chong Hiroyuki Ohsaki Bryan Ng 213 10 0 13 Jan 2025
MEXA-CTP: Mode Experts Cross-Attention for Clinical Trial Outcome PredictionSDM (SDM), 2025 Yiqing Zhang Xiaozhong Liu Fabricio Murai 142 2 0 12 Jan 2025
Large Language Models for BioinformaticsQuantitative Biology (QB), 2025 Wei Ruan Yanjun Lyu Jing Zhang Jianfeng Cai Peng Shu ... Ping Ma Hongtu Zhu Yajun Yan D. Zhu Tianming Liu AI4CE LM&MA 141 10 0 10 Jan 2025
Clinical Insights: A Comprehensive Review of Language Models in MedicinePLOS Digital Health (PDH), 2024 Nikita Neveditsin Pawan Lingras V. Mago LM&MA 492 15 0 08 Jan 2025
Advancing Pancreatic Cancer Prediction with a Next Visit Token Prediction Head on top of Med-BERT Jianping He L. Rasmy Degui Zhi Cui Tao 123 2 0 03 Jan 2025
STAYKATE: Hybrid In-Context Example Selection Combining Representativeness Sampling and Retrieval-based Approach -- A Case Study on Science Domains Chencheng Zhu Kazutaka Shimada Tomoki Taniguchi Tomoko Ohkuma 186 0 0 31 Dec 2024
A Comprehensive Survey of Large Language Models and Multimodal Large Language Models in MedicineInformation Fusion (Inf. Fusion), 2024 Hanguang Xiao Feizhong Zhou Xianglong Liu Tianqi Liu Zhipeng Li Xin Liu Xiaoxuan Huang AILaw LM&MA LRM 407 75 0 31 Dec 2024
INSIGHTBUDDY-AI: Medication Extraction and Entity Linking using Large Language Models and Ensemble Learning Pablo Romero Lifeng Han Goran Nenadic LM&MA 165 1 0 31 Dec 2024
Research on the Proximity Relationships of Psychosomatic Disease Knowledge Graph Modules Extracted by Large Language ModelsScientific Reports (Sci Rep), 2024 Zihan Zhou Ziyi Zeng Wenhao Jiang Yihui Zhu Jiaxin Mao Yonggui Yuan Min Xia Shubin Zhao Mengyu Yao Yunqian Chen 139 0 0 24 Dec 2024
GeneSUM: Large Language Model-based Gene Summary ExtractionIEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024 Zhiwen Chen Chuan Hu Min-Ying Wu Qingqing Long Yuanchun Zhou Yuanchun Zhou Meng Xiao 335 1 0 24 Dec 2024
AlzheimerRAG: Multimodal Retrieval Augmented Generation for Clinical Use Cases using PubMed articlesMachine Learning and Knowledge Extraction (MLKE), 2024 A. Lahiri Qinmin Vivian Hu 273 10 0 21 Dec 2024
ADEQA: A Question Answer based approach for joint ADE-Suspect Extraction using Sequence-To-Sequence TransformersWorkshop on Biomedical Natural Language Processing (BioNLP), 2024 Vinayak Arannil Tomal Deb Atanu Roy 243 2 0 20 Dec 2024
LDC: Learning to Generate Research Idea with Dynamic Control Ruochen Li Liqiang Jing Chi Han Jiawei Zhou Xinya Du LRM 237 13 0 19 Dec 2024
Unlocking the Potential of Weakly Labeled Data: A Co-Evolutionary Learning Framework for Abnormality Detection and Report GenerationIEEE Transactions on Medical Imaging (IEEE TMI), 2024 Jinghan Sun Dong-mei Wei Zhe Xu Donghuan Lu Hong Liu Hong Wang Sotirios A. Tsaftaris Jingyu Sun Yefeng Zheng Liansheng Wang MedIm 313 0 0 18 Dec 2024
NoteContrast: Contrastive Language-Diagnostic Pretraining for Medical Text Prajwal Kailas Max Homilius Rahul C. Deo Calum A. MacRae 281 4 0 16 Dec 2024
Multilabel Classification for Lung Disease Detection: Integrating Deep Learning and Natural Language Processing Maria Efimovich Jayden Lim Vedant Mehta Ethan Poon 189 2 0 16 Dec 2024
Towards Scientific Discovery with Generative AI: Progress, Opportunities, and ChallengesAAAI Conference on Artificial Intelligence (AAAI), 2024 Chandan K. Reddy Parshin Shojaee 291 26 0 16 Dec 2024
Structured Extraction of Real World Medical Knowledge using LLMs for Summarization and SearchBigData Congress [Services Society] (BSS), 2024 Edward Kim Manil Shrestha Richard Foty Tom DeLay Vicki Seyfert-Margolis 294 2 0 16 Dec 2024
Large Language Models for Medical Forecasting -- Foresight 2 Z. Kraljevic Joshua Au Yeung D. Bean James T. Teo Richard J. B. Dobson LM&MA 177 2 0 14 Dec 2024
Accurate Medical Named Entity Recognition Through Specialized NLP Models Jiacheng Hu Runyuan Bao Yang Lin Hanchao Zhang Yanlin Xiang 262 9 0 11 Dec 2024
Rephrasing Electronic Health Records for Pretraining Clinical Language ModelsAustralasian Language Technology Association Workshop (ALTA), 2024 Jinghui Liu Anthony N. Nguyen SyDa LM&MA 320 2 0 28 Nov 2024
Can bidirectional encoder become the ultimate winner for downstream applications of foundation models? Lewen Yang Xuanyu Zhou Juao Fan Xinyi Xie Shengxin Zhu AI4CE 262 1 0 27 Nov 2024
Fine-Tuning Large Language Models for Scientific Text Classification: A Comparative Study Z. R. K. Rostam Gábor Kertész 398 10 0 27 Nov 2024
Adapter-based Approaches to Knowledge-enhanced Language Models -- A SurveyInternational Conference on Knowledge Engineering and Ontology Development (KEOD), 2024 Alexander Fichtl Juraj Vladika Georg Groh KELM 293 1 0 25 Nov 2024
MulModSeg: Enhancing Unpaired Multi-Modal Medical Image Segmentation with Modality-Conditioned Text Embedding and Alternating TrainingIEEE Workshop/Winter Conference on Applications of Computer Vision (WACV), 2024 Chengyin Li Hui Zhu Rafi Ibn Sultan H. Bagher-Ebadian Prashant Khanduri Chetty Indrin Kundan Thind Dongxiao Zhu MedIm 304 4 0 23 Nov 2024
SPICA: Retrieving Scenarios for Pluralistic In-Context AlignmentAnnual Meeting of the Association for Computational Linguistics (ACL), 2024 Quan Ze Chen K. J. Kevin Feng Chan Young Park Amy X. Zhang 197 2 0 16 Nov 2024
Diagnostic Text-guided Representation Learning in Hierarchical Classification for Pathological Whole Slide Image Jiawen Li Qiehe Sun Renao Yan Yizhi Wang Yuqiu Fu Yani Wei Tian Guan Huijuan Shi Yonghonghe He Anjia Han 190 4 0 16 Nov 2024
Increasing the Accessibility of Causal Domain Knowledge via Causal Information Extraction Methods: A Case Study in the Semiconductor Manufacturing IndustryApplied Sciences (AS), 2024 Houssam Razouk Leonie Benischke Daniel Garber Roman Kern 98 1 0 15 Nov 2024
Leveraging Multimodal Models for Enhanced Neuroimaging Diagnostics in Alzheimer's DiseaseBigData Congress [Services Society] (BSS), 2024 Francesco Chiumento Mingming Liu LM&MA 209 3 0 12 Nov 2024
Greenback Bears and Fiscal Hawks: Finance is a Jungle and Text Embeddings Must AdaptConference on Empirical Methods in Natural Language Processing (EMNLP), 2024 Peter Anderson Mano Vikash Janardhanan Jason He Wei Cheng Charlie Flanagan RALM 157 9 0 11 Nov 2024
Evaluating Large Language Models on Financial Report Summarization: An Empirical Study Xinqi Yang Scott Zang Yong Ren Dingjie Peng Zheng Wen 210 3 0 11 Nov 2024
Building an Efficient Multilingual Non-Profit IR System for the Islamic Domain Leveraging Multiprocessing Design in RustConference on Empirical Methods in Natural Language Processing (EMNLP), 2024 Vera Pavlova Mohammed Makhlouf 211 2 0 09 Nov 2024