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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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Title
Medical Adaptation of Large Language and Vision-Language Models: Are We Making Progress?Conference on Empirical Methods in Natural Language Processing (EMNLP), 2024 Daniel P. Jeong Saurabh Garg Zachary Chase Lipton Michael Oberst LM&MA VLM ELM 219 30 0 06 Nov 2024
A Library Perspective on Supervised Text Processing in Digital Libraries: An Investigation in the Biomedical DomainACM/IEEE Joint Conference on Digital Libraries (JCDL), 2024 H. Kroll Pascal Sackhoff Bill Matthias Thang Maha Ksouri Wolf-Tilo Balke 186 0 0 06 Nov 2024
Controlling for Unobserved Confounding with Large Language Model Classification of Patient Smoking Status Samuel Lee Zach Wood-Doughty CML 143 0 0 05 Nov 2024
Explainable cognitive decline detection in free dialogues with a Machine Learning approach based on pre-trained Large Language Models Francisco de Arriba-Pérez Silvia García-Méndez Javier Otero-Mosquera Francisco J. González Castaño 300 8 0 04 Nov 2024
TriG-NER: Triplet-Grid Framework for Discontinuous Named Entity RecognitionThe Web Conference (WWW), 2024 R. Cabral Soyeon Caren Han Areej Alhassan Riza Batista-Navarro Goran Nenadic Josiah Poon 326 1 0 04 Nov 2024
Diagnosing Medical Datasets with Training Dynamics Laura Wenderoth 85 0 0 03 Nov 2024
BioNCERE: Non-Contrastive Enhancement For Relation Extraction In Biomedical Texts Farshad Noravesh 165 0 0 31 Oct 2024
Generative AI-Powered Plugin for Robust Federated Learning in Heterogeneous IoT Networks Youngjoon Lee J. Gong Joonhyuk Kang 301 0 0 31 Oct 2024
RoBIn: A Transformer-Based Model For Risk Of Bias Inference With Machine Reading ComprehensionJournal of Biomedical Informatics (JBI), 2024 Abel Corrêa Dias Viviane Pereira Moreira João Luiz Dihl Comba 236 2 0 28 Oct 2024
TransformLLM: Adapting Large Language Models via LLM-Transformed Reading Comprehension Text Iftach Arbel Yehonathan Refael Ofir Lindenbaum AILaw 128 2 0 28 Oct 2024
Efficient Bilinear Attention-based Fusion for Medical Visual Question Answering Zhilin Zhang Jie Wang Zhanghao Qin Ruiqi Zhu Xiaoliang Gong MedIm 528 0 0 28 Oct 2024
Deep Insights into Cognitive Decline: A Survey of Leveraging Non-Intrusive Modalities with Deep Learning TechniquesApplied Soft Computing (Appl. Soft Comput.), 2024 David Ortiz-Perez Manuel Benavent-Lledo José García Rodríguez David Tomás M. Flores Vizcaya-Moreno 211 3 0 24 Oct 2024
Automated Spinal MRI Labelling from Reports Using a Large Language ModelInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024 Robin Y. Park Rhydian Windsor A. Jamaludin Andrew Zisserman 147 2 0 22 Oct 2024
Generative Design of Functional Metal Complexes Utilizing the Internal Knowledge of Large Language Models Jieyu Lu Zhangde Song Qiyuan Zhao Yuanqi Du Yirui Cao Haojun Jia Chenru Duan AI4CE 212 4 0 21 Oct 2024
Evaluation Of P300 Speller Performance Using Large Language Models Along With Cross-Subject Training Nithin Parthasarathy J. Soetedjo S. Panchavati Nitya Parthasarathy C. Arnold N. Pouratian W. Speier 59 0 0 19 Oct 2024
Weakly-supervised diagnosis identification from Italian discharge letters Vittorio Torri Elisa Barbieri Anna Cantarutti Carlo Giaquinto Francesca Ieva 127 1 0 19 Oct 2024
R-GAT: Cancer Document Classification Leveraging Graph-Based Residual Network for Scenarios with Limited Data Elias Hossain Tasfia Nuzhat Shamsul Masum Shahram Rahimi Sudip Mittal 448 0 0 19 Oct 2024
Leveraging Large Language Models for Enhancing Public Transit Services Jiahao Wang Amer Shalaby 140 2 0 18 Oct 2024
Enabling Scalable Evaluation of Bias Patterns in Medical LLMs Hamed Fayyaz Raphael Poulain Rahmatollah Beheshti 240 4 0 18 Oct 2024
MedINST: Meta Dataset of Biomedical InstructionsConference on Empirical Methods in Natural Language Processing (EMNLP), 2024 Wenhan Han Meng Fang Zihan Zhang Yu Yin Zirui Song Ling-Hao Chen Mykola Pechenizkiy Qingyu Chen LM&MA 229 3 0 17 Oct 2024
Text-guided multi-property molecular optimization with a diffusion language modelInformation Fusion (Inf. Fusion), 2024 Yida Xiong Kun Li Jiameng Chen Hongzhi Zhang Di Lin Shirui Pan Wenbin Hu 304 8 0 17 Oct 2024
Leveraging LLMs for Translating and Classifying Mental Health Data Konstantinos Skianis A. Seza Doğruöz John Pavlopoulos AI4MH 118 4 0 16 Oct 2024
Machine learning approach to brain tumor detection and classification Alice Oh Inyoung Noh Jian Choo Jihoo Lee Justin Park Kate Hwang Sanghyeon Kim Soo Min Oh 164 9 0 16 Oct 2024
Retrieval-Reasoning Large Language Model-based Synthetic Clinical Trial Generation Zhihao Xu Fang Wu Tianfan Fu Yue Zhao SyDa LRM 290 3 0 16 Oct 2024
MedAide: Information Fusion and Anatomy of Medical Intents via LLM-based Agent CollaborationInformation Fusion (Inf. Fusion), 2024 Jinjie Wei Jinjie Wei Yanshu Li Qingyao Xu Zhaoyu Chen ... Yue Jiang Yakun Ju Wei Zhou Wenshu Fan Lihua Zhang 217 4 0 16 Oct 2024
Identifying Task Groupings for Multi-Task Learning Using Pointwise V-Usable InformationJournal of Biomedical Informatics (JBI), 2024 Yingya Li Timothy A. Miller Steven Bethard G. Savova 243 4 0 16 Oct 2024
Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning Hongyi Yuan Suqi Liu Kelly Cho Katherine P. Liao Alexandre Pereira T. Cai MedIm 141 0 0 14 Oct 2024
Arrhythmia Classification Using Graph Neural Networks Based on Correlation MatrixIEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024 Seungwoo Han 293 10 0 14 Oct 2024
SciGisPy: a Novel Metric for Biomedical Text Simplification via Gist Inference Score Chen Lyu Gabriele Pergola 162 6 0 12 Oct 2024
Fine-Tuning In-House Large Language Models to Infer Differential Diagnosis from Radiology Reports Luoyao Chen Revant Teotia Antonio Verdone Aidan Cardall Lakshay Tyagi Yiqiu Shen S. Chopra LM&MA 91 4 0 11 Oct 2024
Optimized Biomedical Question-Answering Services with LLM and Multi-BERT Integration Cheng Qian Xianglong Shi Shanshan Yao Yichen Liu Fengming Zhou Zishu Zhang Junaid Akram Ali Braytee Ali Anaissi AI4MH 141 2 0 11 Oct 2024
Disease Entity Recognition and Normalization is Improved with Large Language Model Derived Synthetic Normalized Mentions Kuleen Sasse Shinjitha Vadlakonda Richard Kennedy J. D. Osborne AI4CE 163 1 0 10 Oct 2024
Representation-Enhanced Neural Knowledge Integration with Application to Large-Scale Medical Ontology Learning Suqi Liu Tianxi Cai Xiaoou Li 149 2 0 09 Oct 2024
Named Clinical Entity Recognition Benchmark Wadood M Abdul Marco AF Pimentel Muhammad Umar Salman Tathagata Raha Clément Christophe Praveen K Kanithi Nasir Hayat Ronnie Rajan Shadab Khan 120 2 0 07 Oct 2024
Leveraging Large Language Models for Suicide Detection on Social Media with Limited LabelsBigData Congress [Services Society] (BSS), 2024 Vy Nguyen Chau Pham ALM AI4MH 408 9 0 06 Oct 2024
Adapting LLMs for the Medical Domain in Portuguese: A Study on Fine-Tuning and Model Evaluation P. H. Paiola Gabriel Lino Garcia João Renato Ribeiro Manesco Mateus Roder Douglas Rodrigues João Paulo Papa LM&MA 96 3 0 30 Sep 2024
Classification of Radiological Text in Small and Imbalanced Datasets in a Non-English Language Vincent Beliveau Helene Kaas Martin Prener Claes N. Ladefoged Desmond Elliott Gitte M. Knudsen Lars H. Pinborg Melanie Ganz 118 2 0 30 Sep 2024
EEG Emotion Copilot: Optimizing Lightweight LLMs for Emotional EEG Interpretation with Assisted Medical Record GenerationNeural Networks (NN), 2024 Hongyu Chen Weiming Zeng Chong Chen Luhui Cai Haiwei Yang ... Wei Zhang Yuchen Ren Hongjie Yan W. Siok Nizhuan Wang 304 0 0 30 Sep 2024
Black-Box Segmentation of Electronic Medical Records Hongyi Yuan Sheng Yu 77 0 0 29 Sep 2024
Exploring Language Model Generalization in Low-Resource Extractive QAInternational Conference on Computational Linguistics (COLING), 2024 Saptarshi Sengupta Wenpeng Yin Preslav Nakov Shreya Ghosh Suhang Wang 253 4 0 27 Sep 2024
The Role of Language Models in Modern Healthcare: A Comprehensive Review Amna Khalid Ayma Khalid Umar Khalid LM&MA 203 1 0 25 Sep 2024
AsthmaBot: Multi-modal, Multi-Lingual Retrieval Augmented Generation For Asthma Patient Support Adil Bahaj Mounir Ghogho 233 3 0 24 Sep 2024
Transfer Learning with Clinical Concept Embeddings from Large Language Models Yuhe Gao Runxue Bao Yuelyu Ji Yiming Sun Chenxi Song Jeffrey P. Ferraro Ye Ye 267 3 0 20 Sep 2024
FoodPuzzle: Developing Large Language Model Agents as Flavor Scientists Tenghao Huang Donghee Lee John Sweeney Jiatong Shi Emily Steliotes Matthew Lange Jonathan May Muhao Chen 307 4 0 19 Sep 2024
MedCodER: A Generative AI Assistant for Medical CodingNorth American Chapter of the Association for Computational Linguistics (NAACL), 2024 Krishanu Das Baksi Elijah Soba John J. Higgins Ravi Saini Jaden Wood ... Jack Scott Nirmala Pudota Tim Weninger Edward Bowen Sanmitra Bhattacharya MedIm 178 7 0 18 Sep 2024
Contextual Breach: Assessing the Robustness of Transformer-based QA Models Asir Saadat Nahian Ibn Asad AAML 275 0 0 17 Sep 2024
A Knowledge-Enhanced Disease Diagnosis Method Based on Prompt Learning and BERT IntegrationJournal of Artificial Intelligence (JAI), 2024 Zhang Zheng 72 0 0 16 Sep 2024
Generating Synthetic Free-text Medical Records with Low Re-identification Risk using Masked Language ModelingNorth American Chapter of the Association for Computational Linguistics (NAACL), 2024 Samuel Belkadi Libo Ren Nicolo Micheletti Lifeng Han Goran Nenadic SyDa MedIm 224 2 0 15 Sep 2024
AlpaPICO: Extraction of PICO Frames from Clinical Trial Documents Using LLMs Madhusudan Ghosh Shrimon Mukherjee Asmit Ganguly Partha Basuchowdhuri S. Naskar Debasis Ganguly 230 14 0 15 Sep 2024
Towards understanding evolution of science through language model series Junjie Dong Zhuoqi Lyu Qing Ke AI4TS 358 0 0 15 Sep 2024