BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 474 papers shown

Title
Biomedical Question Answering: A Survey of Approaches and Challenges Qiao Jin Zheng Yuan Guangzhi Xiong Qian Yu Huaiyuan Ying Chuanqi Tan Mosha Chen Songfang Huang Xiaozhong Liu Sheng Yu 21 95 0 10 Feb 2021
Extracting Lifestyle Factors for Alzheimer's Disease from Clinical Notes Using Deep Learning with Weak Supervision Zitao Shen Yoonkwon Yi A. Bompelli Fang Yu Yanshan Wang Rui Zhang 16 11 0 22 Jan 2021
BERT-GT: Cross-sentence n-ary relation extraction with BERT and Graph Transformer Po-Ting Lai Zhiyong Lu MedIm 30 49 0 11 Jan 2021
How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities? Hyunjae Kim Jaewoo Kang AI4CE 84 21 0 01 Jan 2021
Explaining Black-box Models for Biomedical Text Classification M. Moradi Matthias Samwald 31 21 0 20 Dec 2020
A Practical Approach towards Causality Mining in Clinical Text using Active Transfer Learning Musarrat Hussain Fahad Ahmed Satti Jamil Hussain Taqdir Ali Syed Imran Ali H. M. Bilal Gwang Hoon Park Sungyoung Lee 14 7 0 10 Dec 2020
CrossNER: Evaluating Cross-Domain Named Entity Recognition Zihan Liu Yan Xu Tiezheng Yu Wenliang Dai Ziwei Ji Samuel Cahyawijaya Andrea Madotto Pascale Fung 68 142 0 08 Dec 2020
COVIDScholar: An automated COVID-19 research aggregation and analysis platform Amalie Trewartha John Dagdelen Haoyan Huo Kevin Cruse Zheren Wang ... Akshay Subramanian Yuxing Fei Benjamin Justus Kristin A. Persson Gerbrand Ceder 25 20 0 07 Dec 2020
Automated Coding of Under-Studied Medical Concept Domains: Linking Physical Activity Reports to the International Classification of Functioning, Disability, and Health Denis R. Newman-Griffis Eric Fosler-Lussier 24 18 0 27 Nov 2020
Denmark's Participation in the Search Engine TREC COVID-19 Challenge: Lessons Learned about Searching for Precise Biomedical Scientific Information on COVID-19 Lucas Chaves Lima Casper Hansen Christian B. Hansen Dongsheng Wang Maria Maistro Birger Larsen J. Simonsen Christina Lioma 19 2 0 25 Nov 2020
Biomedical Named Entity Recognition at Scale Veysel Kocaman D. Talby 12 67 0 12 Nov 2020
CODER: Knowledge infused cross-lingual medical term embedding for term normalization Zheng Yuan Zhengyun Zhao Haixia Sun Jiao Li Fei Wang Sheng Yu MedIm 13 95 0 05 Nov 2020
HateBERT: Retraining BERT for Abusive Language Detection in English Tommaso Caselli Valerio Basile Jelena Mitrović Michael Granitzer 22 358 0 23 Oct 2020
Clustering-based Inference for Biomedical Entity Linking Rico Angell Nicholas Monath Sunil Mohan Nishant Yadav Andrew McCallum 31 4 0 21 Oct 2020
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus George Michalopoulos Yuanxin Wang H. Kaka Helen H. Chen Alexander Wong 25 122 0 20 Oct 2020
SmartTriage: A system for personalized patient data capture, documentation generation, and decision support Ilya Valmianski Nave Frost Navdeep Sood Yang Wang Baodong Liu James J. Zhu Sunil Karumuri Ian M. Finn D. Zisook 11 7 0 19 Oct 2020
TweetBERT: A Pretrained Language Representation Model for Twitter Text Analysis Mohiuddin Md Abdul Qudar Vijay K. Mago SSeg 15 34 0 17 Oct 2020
Pretrained Transformers for Text Ranking: BERT and Beyond Jimmy J. Lin Rodrigo Nogueira Andrew Yates VLM 219 610 0 13 Oct 2020
Predicting Clinical Trial Results by Implicit Evidence Integration Qiao Jin Chuanqi Tan Mosha Chen Xiaozhong Liu Songfang Huang 17 8 0 12 Oct 2020
Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease Name Recognition Yun He Ziwei Zhu Yin Zhang Qin Chen James Caverlee AI4MH 28 108 0 08 Oct 2020
Contrastive Cross-Modal Pre-Training: A General Strategy for Small Sample Medical Imaging G. Liang Connor Greenwell Yu Zhang Xiaoqin Wang Ramakanth Kavuluru Nathan Jacobs 34 21 0 06 Oct 2020
Effective Unsupervised Domain Adaptation with Adversarially Trained Language Models Thuy-Trang Vu Dinh Q. Phung Gholamreza Haffari 11 24 0 05 Oct 2020
Cost-effective Selection of Pretraining Data: A Case Study of Pretraining BERT on Social Media Xiang Dai Sarvnaz Karimi Ben Hachey Cécile Paris 16 35 0 02 Oct 2020
Data Transfer Approaches to Improve Seq-to-Seq Retrosynthesis Katsuhiko Ishiguro K. Ujihara R. Sawada Hirotaka Akita Masaaki Kotera 27 6 0 02 Oct 2020
Biomedical named entity recognition using BERT in the machine reading comprehension framework Cong Sun Zhihao Yang Lei Wang Yin Zhang Hongfei Lin Jian Wang 15 93 0 03 Sep 2020
Query Focused Multi-document Summarisation of Biomedical Texts Diego Mollá Aliod Christopher Jones Vincent Nguyen 28 12 0 27 Aug 2020
Multimodal Learning for Cardiovascular Risk Prediction using EHR Data A. Bagheri T. K. Groenhof W. B. Veldhuis P. A. Jong F. Asselbergs Daniel L. Oberski 6 15 0 27 Aug 2020
Conceptualized Representation Learning for Chinese Biomedical Text Mining Ningyu Zhang Qianghuai Jia Kangping Yin Liang Dong Feng Gao Nengwei Hua OOD 34 65 0 25 Aug 2020
COVID-19 therapy target discovery with context-aware literature mining Matej Martinc Blaž Škrlj S. Pirkmajer Nada Lavrac B. Cestnik Martin Marzidovsek Senja Pollak 9 9 0 30 Jul 2020
Transferability of Natural Language Inference to Biomedical Question Answering Minbyul Jeong Mujeen Sung Gangwoo Kim Donghyeon Kim Wonjin Yoon J. Yoo Jaewoo Kang 19 37 0 01 Jul 2020
Classification of cancer pathology reports: a large-scale comparative study S. Martina L. Ventura P. Frasconi 19 11 0 29 Jun 2020
Answering Questions on COVID-19 in Real-Time Jinhyuk Lee Sean S. Yi Minbyul Jeong Mujeen Sung Wonjin Yoon Yonghwa Choi Miyoung Ko Jaewoo Kang 13 43 0 29 Jun 2020
Students Need More Attention: BERT-based AttentionModel for Small Data with Application to AutomaticPatient Message Triage Shijing Si Rui Wang Jedrek Wosik Hao Zhang D. Dov Guoyin Wang Ricardo Henao Lawrence Carin 20 24 0 22 Jun 2020
Results of the seventh edition of the BioASQ Challenge A. Nentidis K. Bougiatiotis Anastasia Krithara G. Paliouras 24 62 0 16 Jun 2020
PERL: Pivot-based Domain Adaptation for Pre-trained Deep Contextualized Embedding Models Eyal Ben-David Carmel Rabinovitz Roi Reichart SSL 50 61 0 16 Jun 2020
Document Classification for COVID-19 Literature Bernal Jiménez Gutiérrez Juncheng Zeng Dongdong Zhang Ping Zhang Yu-Chuan Su OOD 6 32 0 15 Jun 2020
FinBERT: A Pretrained Language Model for Financial Communications Yi Yang Mark Christopher Siy Uy Allen H Huang AIFin AI4CE 13 230 0 15 Jun 2020
Auxiliary Signal-Guided Knowledge Encoder-Decoder for Medical Report Generation Mingjie Li Fuyu Wang Xiaojun Chang Xiaodan Liang MedIm 21 101 0 06 Jun 2020
DeepVar: An End-to-End Deep Learning Approach for Genomic Variant Recognition in Biomedical Literature Chaoran Cheng Fei Tan Zhi Wei 15 7 0 05 Jun 2020
BERTweet: A pre-trained language model for English Tweets Dat Quoc Nguyen Thanh Vu A. Nguyen VLM 32 900 0 20 May 2020
COVID-Twitter-BERT: A Natural Language Processing Model to Analyse COVID-19 Content on Twitter Martin Müller M. Salathé P. Kummervold VLM MedIm AI4MH 24 355 0 15 May 2020
Entity-Enriched Neural Models for Clinical Question Answering Bhanu Pratap Singh Rawat W. Weng So Yeon Min Preethi Raghavan Peter Szolovits 18 18 0 13 May 2020
Detecting Adverse Drug Reactions from Twitter through Domain-Specific Preprocessing and BERT Ensembling Amy Breden L. Moore 23 13 0 11 May 2020
An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining Yifan Peng Qingyu Chen Zhiyong Lu 6 112 0 06 May 2020
CAiRE-COVID: A Question Answering and Query-focused Multi-Document Summarization System for COVID-19 Scholarly Information Management Dan Su Yan Xu Tiezheng Yu Farhad Bin Siddique Elham J. Barezi Pascale Fung RALM 11 31 0 04 May 2020
QURIOUS: Question Generation Pretraining for Text Generation Shashi Narayan Gonçalo Simães Ji Ma Hannah Craighead Ryan T. McDonald 29 15 0 23 Apr 2020
Train No Evil: Selective Masking for Task-Guided Pre-Training Yuxian Gu Zhengyan Zhang Xiaozhi Wang Zhiyuan Liu Maosong Sun 24 59 0 21 Apr 2020
Augmented Curation of Unstructured Clinical Notes from a Massive EHR System Reveals Specific Phenotypic Signature of Impending COVID-19 Diagnosis F. Shweta K. Murugadoss S. Awasthi A. Venkatakrishnan Arjun Puranik ... G. Gores A. Williams J. Halamka V. Soundararajan A. Badley 6 26 0 17 Apr 2020
Calibrating Structured Output Predictors for Natural Language Processing Abhyuday N. Jagannatha Hong-ye Yu 17 28 0 09 Apr 2020
Continual Domain-Tuning for Pretrained Language Models Subendhu Rongali Abhyuday N. Jagannatha Bhanu Pratap Singh Rawat Hong-ye Yu CLL KELM 6 7 0 05 Apr 2020