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2203.15827
Cited By
LinkBERT: Pretraining Language Models with Document Links
Annual Meeting of the Association for Computational Linguistics (ACL), 2022
29 March 2022
Michihiro Yasunaga
J. Leskovec
Abigail Z. Jacobs
KELM
Re-assign community
ArXiv (abs)
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Papers citing
"LinkBERT: Pretraining Language Models with Document Links"
50 / 178 papers shown
TAGFN: A Text-Attributed Graph Dataset for Fake News Detection in the Age of LLMs
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Yuwei Han
Haoyan Xu
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Yue Zhao
Philip S. Yu
125
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0
26 Nov 2025
Comparative Analysis of LoRA-Adapted Embedding Models for Clinical Cardiology Text Representation
Richard J. Young
Alice M. Matthews
96
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24 Nov 2025
RAGSmith: A Framework for Finding the Optimal Composition of Retrieval-Augmented Generation Methods Across Datasets
Muhammed Yusuf Kartal
Suha Kagan Kose
Korhan Sevinç
Burak Aktas
121
0
0
03 Nov 2025
Contrastive Learning Using Graph Embeddings for Domain Adaptation of Language Models in the Process Industry
Anastasia Zhukova
Jonas Lührs
Christian E. Lobmüller
Bela Gipp
179
0
0
06 Oct 2025
Incorporating LLM Embeddings for Variation Across the Human Genome
Hongqian Niu
Jordan Bryan
Xihao Li
Didong Li
BDL
70
0
0
25 Sep 2025
Enriched text-guided variational multimodal knowledge distillation network (VMD) for automated diagnosis of plaque vulnerability in 3D carotid artery MRI
Bo Cao
Fan Yu
Mengmeng Feng
SenHao Zhang
Xin Meng
Yue Zhang
Zhen Qian
Jie Lu
182
0
0
15 Sep 2025
BIBERT-Pipe on Biomedical Nested Named Entity Linking at BioASQ 2025
Chunyu Li
Xindi Zheng
Siqi Liu
101
2
0
10 Sep 2025
Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Conference and Labs of the Evaluation Forum (CLEF), 2025
A. Nentidis
Georgios Katsimpras
Anastasia Krithara
Martin Krallinger
Miguel Rodríguez-Ortega
...
Nicola Ferro
S. Marchesin
Marco Martinelli
Gianmaria Silvello
Georgios Paliouras
96
37
0
28 Aug 2025
Overview of BioASQ 2024: The twelfth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
Conference and Labs of the Evaluation Forum (CLEF), 2025
A. Nentidis
Georgios Katsimpras
Anastasia Krithara
Salvador Lima-López
Eulàlia Farré-Maduell
Martin Krallinger
Natalia Loukachevitch
Vera Davydova
Elena Tutubalina
Georgios Paliouras
107
20
0
28 Aug 2025
MedVQA-TREE: A Multimodal Reasoning and Retrieval Framework for Sarcopenia Prediction
Pardis Moradbeiki
Nasser Ghadiri
Sayed Jalal Zahabi
U. Wiil
Kristoffer Kittelmann Brockhattingen
Ali Ebrahimi
132
0
0
26 Aug 2025
MedCoT-RAG: Causal Chain-of-Thought RAG for Medical Question Answering
Ziyu Wang
Elahe Khatibi
Amir M. Rahmani
CML
LRM
149
2
0
20 Aug 2025
EEG-MedRAG: Enhancing EEG-based Clinical Decision-Making via Hierarchical Hypergraph Retrieval-Augmented Generation
Yi Wang
Haoran Luo
Lu Meng
Ziyu Jia
Xinliang Zhou
Qingsong Wen
180
0
0
19 Aug 2025
Effective Multi-Task Learning for Biomedical Named Entity Recognition
João Ruano
Gonçalo M. Correia
Leonor Barreiros
Afonso Mendes
110
0
0
24 Jul 2025
Error-Aware Curriculum Learning for Biomedical Relation Classification
Sinchani Chakraborty
S. Sarkar
Pawan Goyal
194
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0
18 Jul 2025
TolerantECG: A Foundation Model for Imperfect Electrocardiogram
Huynh Dang Nguyen
Trong-Thang Pham
Ngan Le
Van Nguyen
194
1
0
14 Jul 2025
Prompting is not Enough: Exploring Knowledge Integration and Controllable Generation
Tingjia Shen
Hao Wang
Chuan Qin
Ruijun Sun
Yang Song
Defu Lian
Hengshu Zhu
Tong Xu
323
2
0
26 May 2025
Knowledge-augmented Pre-trained Language Models for Biomedical Relation Extraction
BMC Bioinformatics (BMC Bioinformatics), 2025
Mario Sanger
Ulf Leser
256
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0
01 May 2025
Reduction of Supervision for Biomedical Knowledge Discovery
BMC Bioinformatics (BMC Bioinformatics), 2025
Christos Theodoropoulos
Andrei Catalin Coman
James Henderson
Marie-Francine Moens
209
0
0
13 Apr 2025
WHERE and WHICH: Iterative Debate for Biomedical Synthetic Data Augmentation
Zhengyi Zhao
Shubo Zhang
Bin Liang
Binyang Li
Kam-Fai Wong
SyDa
237
1
0
31 Mar 2025
Self-Evolving Multi-Agent Simulations for Realistic Clinical Interactions
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
Mohammad Almansoori
Kemal Kurniawan
Hisham Cholakkal
897
15
0
28 Mar 2025
Unifying Text Semantics and Graph Structures for Temporal Text-attributed Graphs with Large Language Models
Siwei Zhang
Yun Xiong
Yateng Tang
Jiarong Xu
Xi Chen
Zehao Gu
Xuezheng Hao
Zian Jia
Jiawei Zhang
AI4CE
368
2
0
18 Mar 2025
Can Frontier LLMs Replace Annotators in Biomedical Text Mining? Analyzing Challenges and Exploring Solutions
Yichong Zhao
Susumu Goto
266
1
0
05 Mar 2025
Pub-Guard-LLM: Detecting Retracted Biomedical Articles with Reliable Explanations
Lihu Chen
Shuojie Fu
Gabriel Freedman
Cemre Zor
Guy Martin
James Kinross
Uddhav Vaghela
Ovidiu Serban
Francesca Toni
DeLMO
543
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0
21 Feb 2025
What Are They Filtering Out? An Experimental Benchmark of Filtering Strategies for Harm Reduction in Pretraining Datasets
Marco Antonio Stranisci
Christian Hardmeier
409
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17 Feb 2025
Hierarchical Graph Topic Modeling with Topic Tree-based Transformer
Delvin Ce Zhang
Menglin Yang
Xiaobao Wu
Jiasheng Zhang
Hady W. Lauw
386
0
0
17 Feb 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics
Information Fusion (Inf. Fusion), 2023
Kai He
Rui Mao
Qika Lin
Yucheng Ruan
Xiang Lan
Mengling Feng
Xiaoshi Zhong
LM&MA
AILaw
727
269
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HierPromptLM: A Pure PLM-based Framework for Representation Learning on Heterogeneous Text-rich Networks
Qiuyu Zhu
Liang Zhang
Qianxiong Xu
Cheng Long
918
2
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22 Jan 2025
Neuro-Symbolic AI in 2024: A Systematic Review
Brandon C. Colelough
William Regli
NAI
682
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Information Anxiety in Large Language Models
Prasoon Bajpai
Sarah Masud
Tanmoy Chakraborty
157
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16 Nov 2024
MDCure: A Scalable Pipeline for Multi-Document Instruction-Following
Annual Meeting of the Association for Computational Linguistics (ACL), 2024
Gabrielle Kaili-May Liu
Bowen Shi
Avi Caciularu
Idan Szpektor
Arman Cohan
619
10
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Long-context Protein Language Modeling Using Bidirectional Mamba with Shared Projection Layers
bioRxiv (bioRxiv), 2024
Yingheng Wang
Zichen Wang
Gil Sadeh
Luca Zancato
Alessandro Achille
George Karypis
Huzefa Rangwala
422
1
0
29 Oct 2024
Privately Learning from Graphs with Applications in Fine-tuning Large Language Models
Haoteng Yin
Rongzhe Wei
Eli Chien
P. Li
443
1
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10 Oct 2024
Instructional Segment Embedding: Improving LLM Safety with Instruction Hierarchy
International Conference on Learning Representations (ICLR), 2024
Tong Wu
Shujian Zhang
Kaiqiang Song
Silei Xu
Sanqiang Zhao
Ravi Agrawal
Sathish Indurthi
Chong Xiang
Prateek Mittal
Wenxuan Zhou
406
32
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09 Oct 2024
GADFA: Generator-Assisted Decision-Focused Approach for Opinion Expressing Timing Identification
International Conference on Computational Linguistics (COLING), 2024
Chung-Chi Chen
Hiroya Takamura
Ichiro Kobayashi
Yusuke Miyao
188
0
0
02 Oct 2024
DiMB-RE: Mining the Scientific Literature for Diet-Microbiome Associations
Gibong Hong
Veronica Hindle
Nadine M. Veasley
Hannah D. Holscher
Halil Kilicoglu
AI4CE
290
2
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29 Sep 2024
KALE-LM-Chem: Vision and Practice Toward an AI Brain for Chemistry
Weichen Dai
Yezeng Chen
Zijie Dai
Zhijie Huang
Wenshu Fan
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Chengli Zhong
Xinhe Li
Zeyu Wang
Zhuoying Feng
Yi Zhou
271
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A Survey of Spatio-Temporal EEG data Analysis: from Models to Applications
Pengfei Wang
Huanran Zheng
Silong Dai
Yiqiao Wang
Xiaotian Gu
Man Lan
Xiaoling Wang
SyDa
AI4TS
385
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AlpaPICO: Extraction of PICO Frames from Clinical Trial Documents Using LLMs
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Shrimon Mukherjee
Asmit Ganguly
Partha Basuchowdhuri
S. Naskar
Debasis Ganguly
249
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A New Era in Computational Pathology: A Survey on Foundation and Vision-Language Models
Dibaloke Chanda
Milan Aryal
Nasim Yahya Soltani
Masoud Ganji
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428
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Threshold Filtering Packing for Supervised Fine-Tuning: Training Related Samples within Packs
North American Chapter of the Association for Computational Linguistics (NAACL), 2024
Jiancheng Dong
Lei Jiang
Wei Jin
Lu Cheng
345
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Medical Graph RAG: Towards Safe Medical Large Language Model via Graph Retrieval-Augmented Generation
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Jiayuan Zhu
Yunli Qi
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Multi-modal Data Binding for Survival Analysis Modeling with Incomplete Data and Annotations
Linhao Qu
Dan Huang
Shaoting Zhang
Xiaosong Wang
128
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Pre-Training and Prompting for Few-Shot Node Classification on Text-Attributed Graphs
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Beining Yang
Yukuo Cen
Junyu Ren
Chenhui Zhang
Yuxiao Dong
Evgeny Kharlamov
Shu Zhao
Jie Tang
VLM
221
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Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundational Models
Simha Sankar Baradwaj
Destiny Gilliland
Jack Rincon
Henning Hermjakob
Yu Yan
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Dean Wang
Karol Watson
Alex Bui
Wei Wang
Peipei Ping
322
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Using LLMs to label medical papers according to the CIViC evidence model
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Xing David Wang
196
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Boosting Biomedical Concept Extraction by Rule-Based Data Augmentation
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Fengran Mo
Jian-Yun Nie
MedIm
258
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Extracting and Encoding: Leveraging Large Language Models and Medical Knowledge to Enhance Radiological Text Representation
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René Vidal
Denis Parra
Álvaro Soto
Vladimir Araujo
MedIm
277
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Enhancing Collaborative Semantics of Language Model-Driven Recommendations via Graph-Aware Learning
IEEE Transactions on Knowledge and Data Engineering (TKDE), 2024
Zhong Guan
Likang Wu
Hongke Zhao
Ming He
Jianpin Fan
262
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19 Jun 2024
DTGB: A Comprehensive Benchmark for Dynamic Text-Attributed Graphs
Jiasheng Zhang
Jialin Chen
Menglin Yang
Aosong Feng
Shuang Liang
Jie Shao
Rex Ying
269
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A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery
Yu Zhang
Xiusi Chen
Sara Szymkuć
Sheng Wang
Shuiwang Ji
Wei Wang
Jiawei Han
413
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