BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining

19 October 2022

Papers citing "BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining"

50 / 318 papers shown

Title
X-Reasoner: Towards Generalizable Reasoning Across Modalities and Domains Qianchu Liu Sheng Zhang Guanghui Qin Timothy Ossowski Yu Gu ... Sam Preston Mu-Hsin Wei Paul Vozila Tristan Naumann Hoifung Poon OOD LRM VLM 45 0 0 06 May 2025
Knowledge-Augmented Language Models Interpreting Structured Chest X-Ray Findings Alexander Davis Rafael Souza Jia-Hao Lim 19 0 0 03 May 2025
Enhancing Surgical Documentation through Multimodal Visual-Temporal Transformers and Generative AI Hugo Georgenthum Cristian Cosentino Fabrizio Marozzo Pietro Liò MedIm 51 0 0 28 Apr 2025
Machine Learning and Statistical Insights into Hospital Stay Durations: The Italian EHR Case Marina Andric Mauro Dragoni 12 0 0 25 Apr 2025
EvidenceBench: A Benchmark for Extracting Evidence from Biomedical Papers J. Wang Weili Cao Kaicheng Wang Xiaoyue Wang Ashish Dalvi ... David E. Neal Maxim Khan Christopher D. Rosin R. Paturi Leon Bergen 16 0 0 25 Apr 2025
Towards Harnessing the Collaborative Power of Large and Small Models for Domain Tasks Yang Janet Liu Bingjie Yan Tianyuan Zou Jianqing Zhang Zixuan Gu ... J. Li Xiaozhou Ye Ye Ouyang Qiang Yang Y. Zhang ALM 51 0 0 24 Apr 2025
ConTextual: Improving Clinical Text Summarization in LLMs with Context-preserving Token Filtering and Knowledge Graphs Fahmida Liza Piya Rahmatollah Beheshti 26 0 0 23 Apr 2025
The Rise of Small Language Models in Healthcare: A Comprehensive Survey Muskan Garg Shaina Raza Shebuti Rayana Xingyi Liu Sunghwan Sohn LM&MA AILaw 87 0 0 23 Apr 2025
Streamlining Biomedical Research with Specialized LLMs Linqing Chen Weilei Wang Yubin Xia Wentao Wu Peng Xu ... Lisha Zhang Fu Bian Zhongkai Ye Lidong Pei Changyang Tu 18 1 0 15 Apr 2025
Cancer-Myth: Evaluating AI Chatbot on Patient Questions with False Presuppositions Wang Zhu Tianqi Chen Ching Ying Lin Jade Law Mazen Jizzini Jorge J. Nieva Ruishan Liu Robin Jia 20 0 0 15 Apr 2025
Probabilistic causal graphs as categorical data synthesizers: Do they do better than Gaussian Copulas and Conditional Tabular GANs? Olha Shaposhnyk Noor Abid Mouri Zakir Svetlana Yanushkevich CML 34 0 0 15 Apr 2025
Can We Edit LLMs for Long-Tail Biomedical Knowledge? Xinhao Yi Jake Lever Kevin Bryson Zaiqiao Meng KELM 17 0 0 14 Apr 2025
QM-ToT: A Medical Tree of Thoughts Reasoning Framework for Quantized Model Zongxian Yang Jiayu Qian Z. Huang Kay Chen Tan LM&MA LRM 28 0 0 13 Apr 2025
A Benchmark for End-to-End Zero-Shot Biomedical Relation Extraction with LLMs: Experiments with OpenAI Models Aviv Brokman Xuguang Ai Yuhang Jiang Shashank Gupta Ramakanth Kavuluru SyDa LM&MA 22 0 0 05 Apr 2025
Neutralizing the Narrative: AI-Powered Debiasing of Online News Articles Chen Wei Kuo Kevin Chu Nouar Aldahoul Hazem Ibrahim Talal Rahwan Yasir Zaki SyDa 49 0 0 04 Apr 2025
LOCO-EPI: Leave-one-chromosome-out (LOCO) as a benchmarking paradigm for deep learning based prediction of enhancer-promoter interactions Muhammad Tahir Shehroz S. Khan James Davie Soichiro Yamanaka A. Ashraf 42 1 0 01 Apr 2025
Towards Scientific Intelligence: A Survey of LLM-based Scientific Agents Shuo Ren Pu Jian Zhenjiang Ren Chunlin Leng Can Xie Jiajun Zhang LLMAG AI4CE 53 0 0 31 Mar 2025
RARE: Retrieval-Augmented Reasoning Modeling Zhengren Wang Jiayang Yu Dongsheng Ma Z. Chen Yu Wang ... Feiyu Xiong Yanfeng Wang W. Elwasif Linpeng Tang W. Zhang RALM LRM 31 1 0 30 Mar 2025
Can LLMs Support Medical Knowledge Imputation? An Evaluation-Based Perspective Xinyu Yao Aditya Sannabhadti Holly Wiberg Karmel S. Shehadeh R. Padman 41 0 0 29 Mar 2025
Self-Evolving Multi-Agent Simulations for Realistic Clinical Interactions Mohammad Almansoori K. K. Hisham Cholakkal 43 0 0 28 Mar 2025
Low-resource Information Extraction with the European Clinical Case Corpus Soumitra Ghosh Begona Altuna Saeed Farzi Pietro Ferrazzi A. Lavelli Giulia Mezzanotte Manuela Speranza Bernardo Magnini 47 0 0 26 Mar 2025
ExpertRAG: Efficient RAG with Mixture of Experts -- Optimizing Context Retrieval for Adaptive LLM Responses Esmail Gumaan MoE 23 0 0 23 Mar 2025
Multi-Modal Foundation Models for Computational Pathology: A Survey Dong Li Guihong Wan Xintao Wu Xinyu Wu Xiaohui Chen Yi He Christine G. Lian Peter K. Sorger Yevgeniy R. Semenov Chen Zhao MedIm 40 0 0 12 Mar 2025
From Idea to Implementation: Evaluating the Influence of Large Language Models in Software Development -- An Opinion Paper Sargam Yadav Asifa Mehmood Qureshi Abhishek Kaushik Shubham Sharma Roisin Loughran ... . Nikhil Singh Padraic O'Hara Pranay Jaiswal Roshan Chandru David Lillis 48 1 0 10 Mar 2025
UniGenX: Unified Generation of Sequence and Structure with Autoregressive Diffusion Gongbo Zhang Y. Li Renqian Luo Pipi Hu Zeru Zhao ... Maik Riechert Li-ming Yuan Lei Chen Haiguang Liu Tao Qin DiffM 34 0 0 09 Mar 2025
Can Large Language Models Predict Antimicrobial Resistance Gene? Hyunwoo Yoo AI4CE LM&MA 43 0 0 06 Mar 2025
Can Frontier LLMs Replace Annotators in Biomedical Text Mining? Analyzing Challenges and Exploring Solutions Yichong Zhao Susumu Goto 55 0 0 05 Mar 2025
Addressing Overprescribing Challenges: Fine-Tuning Large Language Models for Medication Recommendation Tasks Zihao Zhao Chenxiao Fan Chongming Gao Fuli Feng Xiangnan He LM&MA AI4MH 78 0 0 05 Mar 2025
Cancer Type, Stage and Prognosis Assessment from Pathology Reports using LLMs Rachit Saluja Jacob Rosenthal Yoav Artzi David J. Pisapia B. Liechty M. Sabuncu LM&MA ELM 55 0 0 03 Mar 2025
On the Importance of Text Preprocessing for Multimodal Representation Learning and Pathology Report Generation R. Lucassen Tijn van de Luijtgaarden Sander P.J. Moonemans Gerben E. Breimer W. Blokx M. Veta 58 0 0 26 Feb 2025
Repurposing the scientific literature with vision-language models Anton Alyakin Jaden Stryker Daniel Alber Karl L. Sangwon Brandon Duderstadt ... Laura Snyder Eric Leuthardt Douglas Kondziolka E. Oermann Eric Karl Oermann 84 0 0 26 Feb 2025
Pathology Report Generation and Multimodal Representation Learning for Cutaneous Melanocytic Lesions R. Lucassen Sander P.J. Moonemans Tijn van de Luijtgaarden Gerben E. Breimer W. Blokx M. Veta MedIm 60 1 0 26 Feb 2025
Compressing Language Models for Specialized Domains Miles Williams G. Chrysostomou Vitor Jeronymo Nikolaos Aletras MQ 34 0 0 25 Feb 2025
Dynamic LLM Routing and Selection based on User Preferences: Balancing Performance, Cost, and Ethics Deepak Babu Piskala Vijay Raajaa Sachin Mishra Bruno Bozza 29 1 0 23 Feb 2025
Protein Large Language Models: A Comprehensive Survey Yijia Xiao Wanjia Zhao Junkai Zhang Yiqiao Jin Han Zhang ... Xiao Luo Yu-Jie Zhang James Y. Zou Y. Sun Wei Wang LM&MA AI4CE 47 3 0 21 Feb 2025
ECG-Expert-QA: A Benchmark for Evaluating Medical Large Language Models in Heart Disease Diagnosis Xu Wang Jiaju Kang Puyu Han Yubao Zhao Qian Liu Liwenfei He Lingqiong Zhang Lingyun Dai Yongcheng Wang Jie Tao LM&MA 60 0 0 16 Feb 2025
From large language models to multimodal AI: A scoping review on the potential of generative AI in medicine Lukas Buess Matthias Keicher Nassir Navab Andreas K. Maier Soroosh Tayebi Arasteh LM&MA 110 0 0 13 Feb 2025
MDCrow: Automating Molecular Dynamics Workflows with Large Language Models Quintina Campbell Sam Cox Jorge Medina Brittany Watterson A. White LLMAG AI4CE 46 1 0 13 Feb 2025
Uncertainty-Aware Adaptation of Large Language Models for Protein-Protein Interaction Analysis Sanket R. Jantre Tianle Wang Gilchan Park Kriti Chopra Nicholas Jeon Xiaoning Qian Nathan M. Urban Byung-Jun Yoon 57 0 0 10 Feb 2025
Fair-MoE: Fairness-Oriented Mixture of Experts in Vision-Language Models Peiran Wang Linjie Tong Jiaxiang Liu Zuozhu Liu VLM MoE 34 0 0 10 Feb 2025
OntoTune: Ontology-Driven Self-training for Aligning Large Language Models Zhiqiang Liu Chengtao Gan Junjie Wang Y. Zhang Zhongpu Bo Mengshu Sun H. Chen Wen Zhang 62 0 0 08 Feb 2025
Position: Multimodal Large Language Models Can Significantly Advance Scientific Reasoning Yibo Yan Shen Wang Jiahao Huo Jingheng Ye Zhendong Chu Xuming Hu Philip S. Yu Carla P. Gomes B. Selman Qingsong Wen LRM 111 9 0 05 Feb 2025
FinBloom: Knowledge Grounding Large Language Model with Real-time Financial Data Ankur Sinha Chaitanya Agarwal P. Malo AIFin 37 0 0 04 Feb 2025
Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models Ran Xu Hejie Cui Yue Yu Xuan Kan Wenqi Shi Yuchen Zhuang Wei Jin Joyce C. Ho Carl Yang 49 12 0 28 Jan 2025
Unveiling Discrete Clues: Superior Healthcare Predictions for Rare Diseases Chuang Zhao Hui Tang Jiheng Zhang Xiaomeng Li 26 0 0 23 Jan 2025
A Survey on Memory-Efficient Large-Scale Model Training in AI for Science Kaiyuan Tian Linbo Qiao Baihui Liu Gongqingjian Jiang Dongsheng Li 29 0 0 21 Jan 2025
Neuradicon: operational representation learning of neuroimaging reports Henry Watkins Robert J. Gray Adam Julius Y. Mah W. H. Pinaya ... Jorge M. Cardoso Sebastien Ourselin Geraint Rees Rolf Jaeger P. Nachev MedIm 34 1 0 20 Jan 2025
Surveying Attitudinal Alignment Between Large Language Models Vs. Humans Towards 17 Sustainable Development Goals Qingyang Wu Ying Xu Tingsong Xiao Yunze Xiao Yitong Li ... Yichi Zhang Shanghai Zhong Yuwei Zhang Wei Lu Yifan Yang 61 1 0 17 Jan 2025
A Comprehensive Survey of Foundation Models in Medicine Wasif Khan Seowung Leem Kyle B. See Joshua K. Wong Shaoting Zhang R. Fang AI4CE LM&MA VLM 93 16 0 17 Jan 2025
Comprehensive Metapath-based Heterogeneous Graph Transformer for Gene-Disease Association Prediction Wentao Cui Shoubo Li Chen Fang Qingqing Long Chengrui Wang Xuezhi Wang Yuanchun Zhou 46 0 0 14 Jan 2025