BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining

19 October 2022

Papers citing "BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining"

50 / 318 papers shown

Title
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs Sheng Zhang Yanbo Xu Naoto Usuyama Hanwen Xu J. Bagga ... Carlo Bifulco M. Lungren Tristan Naumann Sheng Wang Hoifung Poon LM&MA MedIm 145 191 0 10 Jan 2025
Clinical Insights: A Comprehensive Review of Language Models in Medicine Nikita Neveditsin Pawan Lingras V. Mago LM&MA 38 3 0 08 Jan 2025
NetFlowGen: Leveraging Generative Pre-training for Network Traffic Dynamics Jiawei Zhou Woojeong Kim Zhiying Xu Alexander M. Rush Minlan Yu AI4CE 36 0 0 31 Dec 2024
KG4Diagnosis: A Hierarchical Multi-Agent LLM Framework with Knowledge Graph Enhancement for Medical Diagnosis Kaiwen Zuo Yirui Jiang Fan Mo Pietro Lio 81 6 0 22 Dec 2024
Jailbreaking? One Step Is Enough! Weixiong Zheng Peijian Zeng Y. Li Hongyan Wu Nankai Lin J. Chen Aimin Yang Y. Zhou AAML 76 0 0 17 Dec 2024
Towards Scientific Discovery with Generative AI: Progress, Opportunities, and Challenges Chandan K. Reddy Parshin Shojaee 73 3 0 16 Dec 2024
Structured Extraction of Real World Medical Knowledge using LLMs for Summarization and Search Edward Kim Manil Shrestha Richard Foty Tom DeLay Vicki Seyfert-Margolis 69 1 0 16 Dec 2024
A Practical Guide to Fine-tuning Language Models with Limited Data Márton Szép Daniel Rueckert Rüdiger von Eisenhart-Rothe Florian Hinterwimmer SyDa ALM 35 2 0 14 Nov 2024
Artificial Intelligence for Biomedical Video Generation Linyuan Li Jianing Qiu Anujit Saha Lin Li Poyuan Li Mengxian He Ziyu Guo Wu Yuan VGen 55 1 0 12 Nov 2024
On Active Privacy Auditing in Supervised Fine-tuning for White-Box Language Models Qian Sun Hanpeng Wu Xi Sheryl Zhang 31 0 0 11 Nov 2024
Medical Adaptation of Large Language and Vision-Language Models: Are We Making Progress? Daniel P. Jeong Saurabh Garg Zachary Chase Lipton Michael Oberst LM&MA VLM ELM 29 8 0 06 Nov 2024
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond Harsha Nori Naoto Usuyama Nicholas King S. McKinney Xavier Fernandes Sheng Zhang Eric Horvitz LRM LM&MA ELM VLM 52 6 0 06 Nov 2024
Zebra-Llama: A Context-Aware Large Language Model for Democratizing Rare Disease Knowledge Karthik Soman Andrew Langdon Catalina Villouta Chinmay Agrawal Lashaw Salta Braian Peetoom Gianmarco Bellucci Orion J Buske 28 0 0 04 Nov 2024
Adapting While Learning: Grounding LLMs for Scientific Problems with Intelligent Tool Usage Adaptation Bohan Lyu Yadi Cao Duncan Watson-Parris Leon Bergen Taylor Berg-Kirkpatrick Rose Yu 53 3 0 01 Nov 2024
Geo-FuB: A Method for Constructing an Operator-Function Knowledge Base for Geospatial Code Generation Tasks Using Large Language Models Shuyang Hou Anqi Zhao Jianyuan Liang Zhangxiao Shen Huayi Wu 11 0 0 28 Oct 2024
Automated Spinal MRI Labelling from Reports Using a Large Language Model Robin Y. Park Rhydian Windsor A. Jamaludin Andrew Zisserman 17 1 0 22 Oct 2024
How Can We Diagnose and Treat Bias in Large Language Models for Clinical Decision-Making? Kenza Benkirane Jackie Kay Maria Perez-Ortiz 18 0 0 21 Oct 2024
MedLogic-AQA: Enhancing Medical Question Answering with Abstractive Models Focusing on Logical Structures Aizan Zafar Kshitij Mishra Asif Ekbal 11 0 0 20 Oct 2024
Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning Hongyi Yuan Suqi Liu Kelly Cho Katherine P. Liao Alexandre Pereira T. Cai MedIm 19 0 0 14 Oct 2024
Extracting and Transferring Abilities For Building Multi-lingual Ability-enhanced Large Language Models Zhipeng Chen Liang Song K. Zhou Wayne Xin Zhao B. Wang Weipeng Chen Ji-Rong Wen 57 0 0 10 Oct 2024
SAGE: Scalable Ground Truth Evaluations for Large Sparse Autoencoders Constantin Venhoff Anisoara Calinescu Philip H. S. Torr Christian Schroeder de Witt 18 0 0 09 Oct 2024
GraphRouter: A Graph-based Router for LLM Selections Tao Feng Yanzhen Shen Jiaxuan You 40 9 0 04 Oct 2024
Zodiac: A Cardiologist-Level LLM Framework for Multi-Agent Diagnostics Yuan Zhou Peng Zhang Mengya Song Alice Zheng Yiwen Lu Zhiheng Liu Yong Chen Zhaohan Xi LM&MA 20 1 0 02 Oct 2024
Mitigating Backdoor Threats to Large Language Models: Advancement and Challenges Qin Liu Wenjie Mo Terry Tong Jiashu Xu Fei Wang Chaowei Xiao Muhao Chen AAML 28 4 0 30 Sep 2024
SciDFM: A Large Language Model with Mixture-of-Experts for Science Liangtai Sun Danyu Luo Da Ma Zihan Zhao Baocai Chen Zhennan Shen Su Zhu Lu Chen Xin Chen Kai Yu MoE 19 0 0 27 Sep 2024
The Role of Language Models in Modern Healthcare: A Comprehensive Review Amna Khalid Ayma Khalid Umar Khalid LM&MA 12 0 0 25 Sep 2024
Using Large Language Models to Generate Clinical Trial Tables and Figures Yumeng Yang Peter Krusche Kristyn Pantoja Cheng Shi Ethan B. Ludmir Kirk Roberts Gen Zhu LM&MA LMTD 22 0 0 18 Sep 2024
GP-GPT: Large Language Model for Gene-Phenotype Mapping Yanjun Lyu Zihao Wu Lu Zhang Jing Zhang Yiwei Li ... Rongjie Liu Chao Huang Wentao Li Tianming Liu Dajiang Zhu LM&MA 22 3 0 15 Sep 2024
Towards understanding evolution of science through language model series Junjie Dong Zhuoqi Lyu Qing Ke AI4TS 21 0 0 15 Sep 2024
Synthetic4Health: Generating Annotated Synthetic Clinical Letters Libo Ren Samuel Belkadi Lifeng Han Warren Del-Pinto Goran Nenadic SyDa 24 1 0 14 Sep 2024
Evaluating Pre-trained Convolutional Neural Networks and Foundation Models as Feature Extractors for Content-based Medical Image Retrieval A. Mahbod Nematollah Saeidi Sepideh Hatamikia Ramona Woitek VLM MedIm 18 1 0 14 Sep 2024
Protecting Copyright of Medical Pre-trained Language Models: Training-Free Backdoor Model Watermarking Cong Kong Rui Xu Weixi Chen Jiawei Chen Z. Yin AAML MedIm 18 0 0 14 Sep 2024
Eir: Thai Medical Large Language Models Yutthakorn Thiprak Rungtam Ngodngamthaweesuk Songtam Ngodngamtaweesuk LM&MA ELM 30 0 0 13 Sep 2024
Large Language Models in Drug Discovery and Development: From Disease Mechanisms to Clinical Trials Yizhen Zheng Huan Yee Koh M. Yang Li Li Lauren T. May Geoffrey I. Webb Shirui Pan George Church LM&MA 42 9 0 06 Sep 2024
Leveraging Large Language Models through Natural Language Processing to provide interpretable Machine Learning predictions of mental deterioration in real time Francisco de Arriba-Pérez Silvia García-Méndez 17 0 0 05 Sep 2024
Pre-training data selection for biomedical domain adaptation using journal impact metrics Mathieu Lai-king P. Paroubek 18 0 0 04 Sep 2024
Learning from Negative Samples in Generative Biomedical Entity Linking Chanhwi Kim Hyunjae Kim Sihyeon Park Jiwoo Lee Mujeen Sung Jaewoo Kang MedIm 12 0 0 29 Aug 2024
A Survey for Large Language Models in Biomedicine Chong Wang Mengyao Li Junjun He Zhongruo Wang Erfan Darzi ... Yi Yu Pietro Liò Tianyun Wang Yu Guang Wang Yiqing Shen LM&MA 26 5 0 29 Aug 2024
A New Era in Computational Pathology: A Survey on Foundation and Vision-Language Models Dibaloke Chanda Milan Aryal Nasim Yahya Soltani Masoud Ganji AI4CE VLM 34 7 0 23 Aug 2024
Has Multimodal Learning Delivered Universal Intelligence in Healthcare? A Comprehensive Survey Qika Lin Yifan Zhu Xin Mei Ling Huang Jingying Ma Kai He Zhen Peng Erik Cambria Mengling Feng 24 16 0 23 Aug 2024
Geometry Informed Tokenization of Molecules for Language Model Generation Xiner Li Limei Wang Youzhi Luo Carl N. Edwards Shurui Gui Yuchao Lin Heng Ji Shuiwang Ji 26 5 0 19 Aug 2024
Overview of the BioLaySumm 2024 Shared Task on the Lay Summarization of Biomedical Research Articles Tomas Goldsack Carolina Scarton Matthew Shardlow Chenghua Lin 27 30 0 16 Aug 2024
Medical Graph RAG: Towards Safe Medical Large Language Model via Graph Retrieval-Augmented Generation Junde Wu Jiayuan Zhu Yunli Qi 21 22 0 08 Aug 2024
BioMamba: A Pre-trained Biomedical Language Representation Model Leveraging Mamba Ling Yue Sixue Xing Yingzhou Lu Tianfan Fu Mamba AI4CE 22 7 0 05 Aug 2024
MedSyn: LLM-based Synthetic Medical Text Generation Framework Gleb Kumichev Pavel Blinov Yulia Kuzkina Vasily Goncharov Galina Zubkova Nikolai Zenovkin Aleksei Goncharov Andrey Savchenko SyDa MedIm 16 6 0 04 Aug 2024
Improving Retrieval-Augmented Generation in Medicine with Iterative Follow-up Questions Guangzhi Xiong Qiao Jin Xiao Wang Minjia Zhang Zhiyong Lu Aidong Zhang RALM 40 9 0 01 Aug 2024
Is larger always better? Evaluating and prompting large language models for non-generative medical tasks Yinghao Zhu Junyi Gao Zixiang Wang Weibin Liao Xiaochen Zheng Lifang Liang Yasha Wang Chengwei Pan Ewen M. Harrison Liantao Ma ELM LM&MA AI4MH 31 1 0 26 Jul 2024
HeCiX: Integrating Knowledge Graphs and Large Language Models for Biomedical Research Prerana Sanjay Kulkarni Muskaan Jain Disha Sheshanarayana Srinivasan Parthiban 40 0 0 19 Jul 2024
SciCode: A Research Coding Benchmark Curated by Scientists Minyang Tian Luyu Gao Shizhuo Dylan Zhang Xinan Chen Cunwei Fan ... Tianhua Tao Ofir Press Jamie Callan Eliu A. Huerta Hao Peng ELM 30 14 0 18 Jul 2024
DALL-M: Context-Aware Clinical Data Augmentation with LLMs Chihcheng Hsieh Catarina Moreira Isabel Blanco Nobre Sandra Costa Sousa Chun Ouyang M. Brereton Joaquim A. Jorge Jacinto C. Nascimento 29 0 0 11 Jul 2024