BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining

19 October 2022

Papers citing "BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining"

50 / 318 papers shown

Title
Applying Large Language Models for Causal Structure Learning in Non Small Cell Lung Cancer Narmada Naik Ayush Khandelwal Mohit Joshi Madhusudan Atre Hollis Wright ... Giridhar Mamidipudi Ganapati Srinivasa Carlo Bifulco B. Piening Kevin Matlock 80 4 0 13 Nov 2023
ChiMed-GPT: A Chinese Medical Large Language Model with Full Training Regime and Better Alignment to Human Preferences Yuanhe Tian Ruyi Gan Yan Song Jiaxing Zhang Yongdong Zhang AI4MH AI4CE LM&MA 8 28 0 10 Nov 2023
A Survey of Large Language Models in Medicine: Progress, Application, and Challenge Hongjian Zhou Fenglin Liu Boyang Gu Xinyu Zou Jinfa Huang ... Yefeng Zheng Lei A. Clifton Zheng Li Fenglin Liu David A. Clifton LM&MA 23 102 0 09 Nov 2023
Can Large Language Models Design Accurate Label Functions? Naiqing Guan Kaiwen Chen Nick Koudas ALM 10 7 0 01 Nov 2023
Continuous Training and Fine-tuning for Domain-Specific Language Models in Medical Question Answering Zhen Guo Yining Hua LM&MA CLL ALM AI4MH 20 5 0 01 Nov 2023
Interactive Multi-fidelity Learning for Cost-effective Adaptation of Language Model with Sparse Human Supervision Jiaxin Zhang Zhuohang Li Kamalika Das Kumar Sricharan 20 2 0 31 Oct 2023
LUNA: A Model-Based Universal Analysis Framework for Large Language Models Da Song Xuan Xie Jiayang Song Derui Zhu Yuheng Huang Felix Juefei Xu Lei Ma ALM 14 1 0 22 Oct 2023
MedEval: A Multi-Level, Multi-Task, and Multi-Domain Medical Benchmark for Language Model Evaluation Zexue He Yu-Xiang Wang An Yan Yao Liu Eric Y. Chang Amilcare Gentili Julian McAuley Chun-Nan Hsu ELM 34 14 0 21 Oct 2023
BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology Odhran O'Donoghue Aleksandar Shtedritski John Ginger Ralph Abboud Ali E. Ghareeb Justin Booth Samuel G. Rodriques 20 16 0 16 Oct 2023
Hierarchical Pretraining on Multimodal Electronic Health Records Xiaochen Wang Junyu Luo Jiaqi Wang Ziyi Yin Suhan Cui Yuan Zhong Yaqing Wang Fenglong Ma 21 5 0 11 Oct 2023
Survey on Factuality in Large Language Models: Knowledge, Retrieval and Domain-Specificity Cunxiang Wang Xiaoze Liu Yuanhao Yue Xiangru Tang Tianhang Zhang ... Linyi Yang Jindong Wang Xing Xie Zheng-Wei Zhang Yue Zhang HILM KELM 31 170 0 11 Oct 2023
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations Qizhi Pei Wei Zhang Jinhua Zhu Kehan Wu Kaiyuan Gao Lijun Wu Yingce Xia Rui Yan 28 60 0 11 Oct 2023
Multi-domain improves out-of-distribution and data-limited scenarios for medical image analysis Ece Ozkan Xavier Boix OOD 15 0 0 10 Oct 2023
A Comprehensive Evaluation of Large Language Models on Benchmark Biomedical Text Processing Tasks Fangshuo Liao Md Tahmid Rahman Laskar Cruz Barnum Jimmy X. Huang AI4MH LM&MA 17 28 0 06 Oct 2023
Redefining Digital Health Interfaces with Large Language Models F. Imrie Paulius Rauba M. Schaar AI4MH LM&MA 11 3 0 05 Oct 2023
AutoDAN: Generating Stealthy Jailbreak Prompts on Aligned Large Language Models Xiaogeng Liu Nan Xu Muhao Chen Chaowei Xiao SILM 20 257 0 03 Oct 2023
Conversational Health Agents: A Personalized LLM-Powered Agent Framework Mahyar Abbasian Iman Azimi Amir M. Rahmani Ramesh C. Jain AI4CE LM&MA 16 69 0 03 Oct 2023
OceanGPT: A Large Language Model for Ocean Science Tasks Zhen Bi Ningyu Zhang Yida Xue Yixin Ou Daxiong Ji Guozhou Zheng Huajun Chen ALM LLMAG 15 27 0 03 Oct 2023
Overview of the BioLaySumm 2023 Shared Task on Lay Summarization of Biomedical Research Articles Tomas Goldsack Jiancheng Yang Qianqian Xie Carolina Scarton Matthew Shardlow Sophia Ananiadou Chenghua Lin 20 16 0 29 Sep 2023
An evaluation of GPT models for phenotype concept recognition T. Groza Harry Caufield D. Gration Gareth Baynam M. Haendel Peter N. Robinson Christopher J. Mungall Justin P Reese LM&MA 9 18 0 29 Sep 2023
Efficient Post-training Quantization with FP8 Formats Haihao Shen Naveen Mellempudi Xin He Q. Gao Chang‐Bao Wang Mengni Wang MQ 15 19 0 26 Sep 2023
Investigating Large Language Models and Control Mechanisms to Improve Text Readability of Biomedical Abstracts Z. Li Samuel Belkadi Nicolo Micheletti Lifeng Han Matthew Shardlow Goran Nenadic 20 5 0 22 Sep 2023
Foundation Metrics for Evaluating Effectiveness of Healthcare Conversations Powered by Generative AI Mahyar Abbasian Elahe Khatibi Iman Azimi David Oniani Zahra Shakeri Hossein Abad ... Bryant Lin Olivier Gevaert Li-Jia Li Ramesh C. Jain Amir M. Rahmani LM&MA ELM AI4MH 15 63 0 21 Sep 2023
PAGER: A Framework for Failure Analysis of Deep Regression Models Jayaraman J. Thiagarajan V. Narayanaswamy Puja Trivedi Rushil Anirudh 17 0 0 20 Sep 2023
GPT-Lab: Next Generation Of Optimal Chemistry Discovery By GPT Driven Robotic Lab Xiaokai Qin Mingda Song Yangguan Chen Zhehong Ai Jing Jiang 17 3 0 15 Sep 2023
Detecting ChatGPT: A Survey of the State of Detecting ChatGPT-Generated Text Mahdi Dhaini Wessel Poelman Ege Erdogan DeLMO 31 12 0 14 Sep 2023
Generating Natural Language Queries for More Effective Systematic Review Screening Prioritisation Shuai Wang Harrisen Scells Martin Potthast Bevan Koopman Guido Zuccon 19 10 0 11 Sep 2023
Knowledge-tuning Large Language Models with Structured Medical Knowledge Bases for Reliable Response Generation in Chinese Hao Wang Sendong Zhao Zewen Qiang Zijian Li Nuwa Xi ... Haoqiang Guo Yuhan Chen Haoming Xu Bing Qin Ting Liu LM&MA AI4MH 11 16 0 08 Sep 2023
Aligning Large Language Models for Clinical Tasks Supun Manathunga Isuru Hettigoda LM&MA ELM AI4MH 4 10 0 06 Sep 2023
An Automatic Evaluation Framework for Multi-turn Medical Consultations Capabilities of Large Language Models Yusheng Liao Yutong Meng Hongcheng Liu Yanfeng Wang Yu Wang LM&MA ELM 6 6 0 05 Sep 2023
Augmenting Black-box LLMs with Medical Textbooks for Biomedical Question Answering Yubo Wang Xueguang Ma Wenhu Chen LM&MA AI4MH 32 7 0 05 Sep 2023
Large language models in medicine: the potentials and pitfalls J. Omiye Haiwen Gui Shawheen J. Rezaei James Zou Roxana Daneshjou LM&MA 11 64 0 31 Aug 2023
Examining User-Friendly and Open-Sourced Large GPT Models: A Survey on Language, Multimodal, and Scientific GPT Models Kaiyuan Gao Su He Zhenyu He Jiacheng Lin Qizhi Pei Jie Shao Wei Zhang LM&MA SyDa 15 4 0 27 Aug 2023
SciEval: A Multi-Level Large Language Model Evaluation Benchmark for Scientific Research Liangtai Sun Yang Han Zihan Zhao Da Ma Zhe-Wei Shen Baocai Chen Lu Chen Kai Yu ELM 32 29 0 25 Aug 2023
DARWIN Series: Domain Specific Large Language Models for Natural Science Tong Xie Yuwei Wan Wei Huang Zhenyu Yin Yixuan Liu ... Chunyu Kit Clara Grazian Wenjie Zhang Imran Razzak B. Hoex ELM ALM AI4CE 17 22 0 25 Aug 2023
Utilizing Semantic Textual Similarity for Clinical Survey Data Feature Selection Benjamin C. Warner Ziqi Xu S. Haroutounian Thomas Kannampallil Chenyang Lu 8 2 0 19 Aug 2023
GIT-Mol: A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text Peng Liu Yiming Ren Jun Tao Zhixiang Ren AI4CE 25 78 0 14 Aug 2023
A Survey of Spanish Clinical Language Models Guillem García Subies Á. Jiménez Paloma Martínez LM&MA ELM LRM 6 0 0 04 Aug 2023
Med-Flamingo: a Multimodal Medical Few-shot Learner Michael Moor Qian Huang Shirley Wu Michihiro Yasunaga C. Zakka Yashodhara Dalmia E. Reis Pranav Rajpurkar J. Leskovec LM&MA MedIm 8 227 0 27 Jul 2023
Evaluating Large Language Models for Radiology Natural Language Processing Zheng Liu Tianyang Zhong Yiwei Li Yutong Zhang Yirong Pan ... Shijie Zhao Quanzheng Li Hongtu Zhu Dinggang Shen Tianming Liu LM&MA ELM 38 6 0 25 Jul 2023
Towards a Visual-Language Foundation Model for Computational Pathology Ming Y. Lu Bowen Chen Drew F. K. Williamson Richard J. Chen Ivy Liang ... Andrew Zhang L. Le Georg Gerber Anil V. Parwani Faisal Mahmood VLM MedIm 15 46 0 24 Jul 2023
CohortGPT: An Enhanced GPT for Participant Recruitment in Clinical Study Zihan Guan Zihao Wu Zheng Liu Dufan Wu Hui Ren Quanzheng Li Xiang Li Ninghao Liu LM&MA 19 19 0 21 Jul 2023
Generative Language Models on Nucleotide Sequences of Human Genes M. Ihtiyar Arzucan Özgür 8 0 0 20 Jul 2023
FinGPT: Democratizing Internet-scale Data for Financial Large Language Models Xiao-Yang Liu Guoxuan Wang Hongyang Yang Daochen Zha AIFin 18 41 0 19 Jul 2023
Comparative Performance Evaluation of Large Language Models for Extracting Molecular Interactions and Pathway Knowledge Gilchan Park Byung-Jun Yoon Xihaier Luo Vanessa López-Marrero Shinjae Yoo Francis J. Alexander 23 10 0 17 Jul 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events Yu Gu Sheng Zhang Naoto Usuyama Yonas G. Woldesenbet Cliff Wong ... Mu-Hsin Wei Naveen Valluri Erika Strandberg Tristan Naumann Hoifung Poon LM&MA AI4MH 8 18 0 12 Jul 2023
Enhancing Biomedical Text Summarization and Question-Answering: On the Utility of Domain-Specific Pre-Training Dima Galat Marian-Andrei Rizoiu 14 2 0 10 Jul 2023
ChatGPT in the Age of Generative AI and Large Language Models: A Concise Survey S. Mohamadi G. Mujtaba Ngan Le Gianfranco Doretto Don Adjeroh LM&MA AI4MH 10 20 0 09 Jul 2023
Parameter-Efficient Fine-Tuning of LLaMA for the Clinical Domain Aryo Pradipta Gema Pasquale Minervini Luke Daines Tom Hope Beatrice Alex LM&MA ALM 19 40 0 06 Jul 2023
SMILE: Evaluation and Domain Adaptation for Social Media Language Understanding Vasilisa Bashlovkina Riley Matthews Zhaobin Kuang Simon Baumgartner Michael Bendersky 25 4 0 30 Jun 2023