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BioBERT: a pre-trained biomedical language representation model for
  biomedical text mining
v1v2v3v4 (latest)

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019
Jinhyuk Lee
Wonjin Yoon
Sungdong Kim
Donghyeon Kim
Sunkyu Kim
Chan Ho So
Jaewoo Kang
    OOD
ArXiv (abs)PDFHTMLGithub (689★)

Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

50 / 1,900 papers shown
Multi-domain improves out-of-distribution and data-limited scenarios for
  medical image analysis
Multi-domain improves out-of-distribution and data-limited scenarios for medical image analysis
Ece Ozkan
Xavier Boix
OOD
277
2
0
10 Oct 2023
Rethinking Model Selection and Decoding for Keyphrase Generation with
  Pre-trained Sequence-to-Sequence Models
Rethinking Model Selection and Decoding for Keyphrase Generation with Pre-trained Sequence-to-Sequence ModelsConference on Empirical Methods in Natural Language Processing (EMNLP), 2023
Di Wu
Wasi Uddin Ahmad
Kai-Wei Chang
250
12
0
10 Oct 2023
LLM for SoC Security: A Paradigm Shift
LLM for SoC Security: A Paradigm ShiftIEEE Access (IEEE Access), 2023
Dipayan Saha
Shams Tarek
Katayoon Yahyaei
S. Saha
Jingbo Zhou
M. Tehranipoor
Farimah Farahmandi
361
85
0
09 Oct 2023
A Comprehensive Evaluation of Large Language Models on Benchmark
  Biomedical Text Processing Tasks
A Comprehensive Evaluation of Large Language Models on Benchmark Biomedical Text Processing Tasks
Fangshuo Liao
Md Tahmid Rahman Laskar
Cruz Barnum
Jimmy Xiangji Huang
AI4MHLM&MA
370
119
0
06 Oct 2023
Deep Representations of First-person Pronouns for Prediction of
  Depression Symptom Severity
Deep Representations of First-person Pronouns for Prediction of Depression Symptom Severity
Xinyang Ren
Hannah A. Burkhardt
Patricia A. Areán
Thomas D Hull
Trevor Cohen
84
3
0
05 Oct 2023
Know2BIO: A Comprehensive Dual-View Benchmark for Evolving Biomedical
  Knowledge Graphs
Know2BIO: A Comprehensive Dual-View Benchmark for Evolving Biomedical Knowledge Graphs
Yijia Xiao
Dylan Steinecke
Alexander R. Pelletier
Yushi Bai
Peipei Ping
Wei Wang
192
1
0
05 Oct 2023
A Survey of GPT-3 Family Large Language Models Including ChatGPT and
  GPT-4
A Survey of GPT-3 Family Large Language Models Including ChatGPT and GPT-4Natural Language Processing Journal (JNLP), 2023
Katikapalli Subramanyam Kalyan
LM&MAAI4CELRMAILawELM
320
346
0
04 Oct 2023
Literature Based Discovery (LBD): Towards Hypothesis Generation and
  Knowledge Discovery in Biomedical Text Mining
Literature Based Discovery (LBD): Towards Hypothesis Generation and Knowledge Discovery in Biomedical Text Mining
Balu Bhasuran
Gurusamy Murugesan
J. Natarajan
AI4CE
296
3
0
04 Oct 2023
Conversational Health Agents: A Personalized LLM-Powered Agent Framework
Conversational Health Agents: A Personalized LLM-Powered Agent Framework
Mahyar Abbasian
Iman Azimi
Amir M. Rahmani
Ramesh C. Jain
AI4CELM&MA
539
115
0
03 Oct 2023
Extraction of Medication and Temporal Relation from Clinical Text using
  Neural Language Models
Extraction of Medication and Temporal Relation from Clinical Text using Neural Language ModelsBigData Congress [Services Society] (BSS), 2023
Hangyu Tu
Lifeng Han
Goran Nenadic
232
5
0
03 Oct 2023
Question-Answering Model for Schizophrenia Symptoms and Their Impact on
  Daily Life using Mental Health Forums Data
Question-Answering Model for Schizophrenia Symptoms and Their Impact on Daily Life using Mental Health Forums Data
Christian Internò
Eloisa Ambrosini
AI4MH
199
0
0
30 Sep 2023
A Large Language Model Approach to Educational Survey Feedback Analysis
A Large Language Model Approach to Educational Survey Feedback AnalysisInternational Journal of Artificial Intelligence in Education (IJAIED), 2023
Michael J. Parker
Caitlin Anderson
Claire Stone
YeaRim Oh
ELMLM&MAAI4Ed
334
36
0
29 Sep 2023
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges
  and Opportunities
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities
Jiaoyan Chen
Hang Dong
Janna Hastings
Ernesto Jiménez-Ruiz
Vanessa Lopez
Pierre Monnin
Catia Pesquita
Petr vSkoda
Valentina A. M. Tamma
428
20
0
29 Sep 2023
An evaluation of GPT models for phenotype concept recognition
An evaluation of GPT models for phenotype concept recognition
T. Groza
Harry Caufield
D. Gration
Gareth Baynam
M. Haendel
Peter N. Robinson
Christopher J. Mungall
Justin P Reese
LM&MA
159
36
0
29 Sep 2023
Medical Foundation Models are Susceptible to Targeted Misinformation
  Attacks
Medical Foundation Models are Susceptible to Targeted Misinformation Attacks
T. Han
S. Nebelung
Firas Khader
Tian Wang
Gustav Mueller-Franzes
...
Jens Kleesiek
Christoph Haarburger
Keno K. Bressem
Jakob Nikolas Kather
Daniel Truhn
AAML
95
7
0
29 Sep 2023
Using Weak Supervision and Data Augmentation in Question Answering
Using Weak Supervision and Data Augmentation in Question Answering
Chumki Basu
Binyuan Hui
Allen McIntosh
Wei Wang
J. Wullert
OOD
268
1
0
28 Sep 2023
MKRAG: Medical Knowledge Retrieval Augmented Generation for Medical
  Question Answering
MKRAG: Medical Knowledge Retrieval Augmented Generation for Medical Question Answering
Takuya Higuchi
Shaochen Xu
Avamarie Brueggeman
Zheng Liu
Tianming Liu
Xiang Li
Ninghao Liu
RALM
232
34
0
27 Sep 2023
Comprehensive Overview of Named Entity Recognition: Models,
  Domain-Specific Applications and Challenges
Comprehensive Overview of Named Entity Recognition: Models, Domain-Specific Applications and Challenges
Kalyani Pakhale
259
35
0
25 Sep 2023
Investigating Large Language Models and Control Mechanisms to Improve
  Text Readability of Biomedical Abstracts
Investigating Large Language Models and Control Mechanisms to Improve Text Readability of Biomedical AbstractsIEEE International Conference on Healthcare Informatics (ICHI), 2023
Z. Li
Samuel Belkadi
Nicolo Micheletti
Lifeng Han
Matthew Shardlow
Goran Nenadic
258
12
0
22 Sep 2023
Nested Event Extraction upon Pivot Element Recogniton
Nested Event Extraction upon Pivot Element RecognitonInternational Conference on Language Resources and Evaluation (LREC), 2023
Weicheng Ren
Zixuan Li
Xiaolong Jin
Long Bai
Miao Su
Yantao Liu
Saiping Guan
Jiafeng Guo
Xueqi Cheng
223
1
0
22 Sep 2023
DRG-LLaMA : Tuning LLaMA Model to Predict Diagnosis-related Group for
  Hospitalized Patients
DRG-LLaMA : Tuning LLaMA Model to Predict Diagnosis-related Group for Hospitalized Patients
Hanyin Wang
Chufan Gao
Christopher Dantona
Bryan Hull
Jimeng Sun
LM&MA
180
98
0
22 Sep 2023
Foundation Metrics for Evaluating Effectiveness of Healthcare
  Conversations Powered by Generative AI
Foundation Metrics for Evaluating Effectiveness of Healthcare Conversations Powered by Generative AI
Mahyar Abbasian
Elahe Khatibi
Iman Azimi
David Oniani
Zahra Shakeri Hossein Abad
...
Bryant Lin
Olivier Gevaert
Li-Jia Li
Ramesh C. Jain
Amir M. Rahmani
LM&MAELMAI4MH
520
132
0
21 Sep 2023
Inspire the Large Language Model by External Knowledge on BioMedical
  Named Entity Recognition
Inspire the Large Language Model by External Knowledge on BioMedical Named Entity Recognition
Junyi Bian
Jiaxuan Zheng
Yuyi Zhang
Shanfeng Zhu
180
13
0
21 Sep 2023
Improving VTE Identification through Adaptive NLP Model Selection and
  Clinical Expert Rule-based Classifier from Radiology Reports
Improving VTE Identification through Adaptive NLP Model Selection and Clinical Expert Rule-based Classifier from Radiology ReportsIEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2023
Jamie Deng
Yusen Wu
Hilary Hayssen
Brian Englum
A. Kankaria
...
Shalini Sahoo
John Sorkin
B. Lal
Yelena Yesha
Phuong Nguyen
188
2
0
21 Sep 2023
Visual Question Answering in the Medical Domain
Visual Question Answering in the Medical DomainInternational Conference on Digital Image Computing: Techniques and Applications (DICTA), 2023
Louisa Canepa
Sonit Singh
Arcot Sowmya
149
18
0
20 Sep 2023
Investigating Zero- and Few-shot Generalization in Fact Verification
Investigating Zero- and Few-shot Generalization in Fact VerificationInternational Joint Conference on Natural Language Processing (IJCNLP), 2023
Liangming Pan
Yunxiang Zhang
Min-Yen Kan
193
7
0
18 Sep 2023
HealthFC: Verifying Health Claims with Evidence-Based Medical
  Fact-Checking
HealthFC: Verifying Health Claims with Evidence-Based Medical Fact-CheckingInternational Conference on Language Resources and Evaluation (LREC), 2023
Juraj Vladika
Phillip Schneider
Florian Matthes
273
31
0
15 Sep 2023
MAPLE: Mobile App Prediction Leveraging Large Language Model Embeddings
MAPLE: Mobile App Prediction Leveraging Large Language Model EmbeddingsProceedings of the ACM on Interactive Mobile Wearable and Ubiquitous Technologies (IMWUT), 2023
Yonchanok Khaokaew
Hao Xue
Flora D. Salim
VLMAI4TS
238
6
0
15 Sep 2023
Text Classification of Cancer Clinical Trial Eligibility Criteria
Text Classification of Cancer Clinical Trial Eligibility Criteria
Yumeng Yang
Soumya Jayaraj
Ethan B. Ludmir
Kirk Roberts
194
10
0
14 Sep 2023
Leveraging Large Language Models and Weak Supervision for Social Media
  data annotation: an evaluation using COVID-19 self-reported vaccination
  tweets
Leveraging Large Language Models and Weak Supervision for Social Media data annotation: an evaluation using COVID-19 self-reported vaccination tweetsInteracción (HCI), 2023
Ramya Tekumalla
Juan M. Banda
184
16
0
12 Sep 2023
Information Flow in Graph Neural Networks: A Clinical Triage Use Case
Information Flow in Graph Neural Networks: A Clinical Triage Use CaseInternational Conference on Digital Health (ICDH), 2023
Víctor Valls
Mykhaylo Zayats
Alessandra Pascale
170
3
0
12 Sep 2023
Content Reduction, Surprisal and Information Density Estimation for Long
  Documents
Content Reduction, Surprisal and Information Density Estimation for Long Documents
Shaoxiong Ji
Wei Sun
Pekka Marttinen
222
2
0
12 Sep 2023
Applying BioBERT to Extract Germline Gene-Disease Associations for
  Building a Knowledge Graph from the Biomedical Literature
Applying BioBERT to Extract Germline Gene-Disease Associations for Building a Knowledge Graph from the Biomedical LiteratureInternational Conference on Information System and Data Mining (ICISDM), 2023
Armando D. Diaz Gonzalez
K. Hughes
Songhui Yue
S. Hayes
164
4
0
11 Sep 2023
CrisisTransformers: Pre-trained language models and sentence encoders
  for crisis-related social media texts
CrisisTransformers: Pre-trained language models and sentence encoders for crisis-related social media textsKnowledge-Based Systems (KBS), 2023
Rabindra Lamsal
M. Read
S. Karunasekera
281
21
0
11 Sep 2023
Knowledge-tuning Large Language Models with Structured Medical Knowledge
  Bases for Reliable Response Generation in Chinese
Knowledge-tuning Large Language Models with Structured Medical Knowledge Bases for Reliable Response Generation in ChineseACM Transactions on Knowledge Discovery from Data (TKDD), 2023
Hao Wang
Sendong Zhao
Zewen Qiang
Zijian Li
Nuwa Xi
...
Haoqiang Guo
Yuhan Chen
Haoming Xu
Bing Qin
Ting Liu
LM&MAAI4MH
214
27
0
08 Sep 2023
Aligning Large Language Models for Clinical Tasks
Aligning Large Language Models for Clinical Tasks
Supun Manathunga
Isuru Hettigoda
LM&MAELMAI4MH
280
12
0
06 Sep 2023
Improving Image Classification of Knee Radiographs: An Automated Image
  Labeling Approach
Improving Image Classification of Knee Radiographs: An Automated Image Labeling Approach
Jikai Zhang
Carlos Santos
Christine Park
Maciej A. Mazurowski
R. Colglazier
120
3
0
06 Sep 2023
Incorporating Dictionaries into a Neural Network Architecture to Extract
  COVID-19 Medical Concepts From Social Media
Incorporating Dictionaries into a Neural Network Architecture to Extract COVID-19 Medical Concepts From Social Media
A. Hasan
M. Levene
David J. Weston
108
0
0
05 Sep 2023
Augmenting Black-box LLMs with Medical Textbooks for Biomedical Question Answering
Augmenting Black-box LLMs with Medical Textbooks for Biomedical Question AnsweringConference on Empirical Methods in Natural Language Processing (EMNLP), 2023
Yubo Wang
Xueguang Ma
Wenhu Chen
LM&MAAI4MH
310
37
0
05 Sep 2023
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural
  Knowledge Extraction in Biomedical Texts
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural Knowledge Extraction in Biomedical TextsNeural Information Processing Systems (NeurIPS), 2023
R. Dannenfelser
Jeffrey Zhong
Ran Zhang
Vicky Yao
170
1
0
04 Sep 2023
DiscoverPath: A Knowledge Refinement and Retrieval System for
  Interdisciplinarity on Biomedical Research
DiscoverPath: A Knowledge Refinement and Retrieval System for Interdisciplinarity on Biomedical ResearchInternational Conference on Information and Knowledge Management (CIKM), 2023
Yu-Neng Chuang
Guanchu Wang
Chia-Yuan Chang
Kwei-Herng Lai
Daochen Zha
...
Fan Yang
Alfredo Costilla Reyes
Kaixiong Zhou
Xiaoqian Jiang
Helen Zhou
233
5
0
04 Sep 2023
Knowledge Graph Embeddings for Multi-Lingual Structured Representations
  of Radiology Reports
Knowledge Graph Embeddings for Multi-Lingual Structured Representations of Radiology Reports
Tom van Sonsbeek
Xiantong Zhen
Marcel Warring
186
1
0
02 Sep 2023
Large language models in medicine: the potentials and pitfalls
Large language models in medicine: the potentials and pitfallsAnnals of Internal Medicine (Ann Intern Med), 2023
J. Omiye
Haiwen Gui
Shawheen J. Rezaei
James Zou
Roxana Daneshjou
LM&MA
299
135
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31 Aug 2023
Multimodal Foundation Models For Echocardiogram Interpretation
Multimodal Foundation Models For Echocardiogram Interpretation
M. Christensen
Milos Vukadinovic
N. Yuan
David Ouyang
MedIm
290
9
0
29 Aug 2023
Exploring the Transfer Learning Capabilities of CLIP in Domain
  Generalization for Diabetic Retinopathy
Exploring the Transfer Learning Capabilities of CLIP in Domain Generalization for Diabetic Retinopathy
Sanoojan Baliah
F. Maani
Santosh Sanjeev
M. H. Khan
151
15
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27 Aug 2023
Knowledge-injected Prompt Learning for Chinese Biomedical Entity
  Normalization
Knowledge-injected Prompt Learning for Chinese Biomedical Entity Normalization
Songhua Yang
Chenghao Zhang
Hongfei Xu
Yuxiang Jia
MedIm
94
1
0
23 Aug 2023
An extensible point-based method for data chart value detection
An extensible point-based method for data chart value detection
Carlos Soto
Shinjae Yoo
3DPC
89
1
0
22 Aug 2023
BELB: a Biomedical Entity Linking Benchmark
BELB: a Biomedical Entity Linking Benchmark
Samuele Garda
Leon Weber-Genzel
Robert Martin
Ulf Leser
179
7
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22 Aug 2023
Unlocking Hardware Security Assurance: The Potential of LLMs
Unlocking Hardware Security Assurance: The Potential of LLMs
Xingyu Meng
Amisha Srivastava
Ayush Arunachalam
Avik Ray
Pedro Henrique Silva
Rafail Psiakis
Yiorgos Makris
K. Basu
131
46
0
21 Aug 2023
Software Entity Recognition with Noise-Robust Learning
Software Entity Recognition with Noise-Robust LearningInternational Conference on Automated Software Engineering (ASE), 2023
Nguyen Tai
Yifeng Di
J. Lee
Muhao Chen
Tianyi Zhang
174
7
0
21 Aug 2023
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